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Summary

An open API service for producing an overview of a list of open source projects.

Collections: Critical open source scientific software

https://gitlab.com/gromacs/gromacs

The GROMACS molecular simulation toolkit.

molecular dynamics simulation

Last synced: 27 Oct 2026

https://github.com/rachis-org/rachis

Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))

hacktoberfest

Last synced: 27 Oct 2026

https://github.com/neuronsimulator/nrn

NEURON Simulator

high-performance-computing neuron neuroscience simulation

Last synced: 28 Oct 2026

https://github.com/biolab/orange3

šŸŠ :bar_chart: :bulb: Orange: Interactive data analysis

classification clustering data-mining data-science data-visualization decision-trees machine-learning numpy orange orange3 pandas plotting python random-forest regression scikit-learn scipy visual-programming visualization

Last synced: 27 Oct 2026

https://github.com/Slicer/Slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 28 Oct 2026

https://github.com/afni/afni

Official AFNI source and documentation

anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization

Last synced: 27 Oct 2026

Keywords
bioinformatics 3 simulation 3 python 3 visualization 3 machine-learning 2 c-plus-plus 2 image-processing 2 hpc 2 genomics 2 spark 1 sequencing 1 science 1 ngs 1 genome 1 gatk 1 dna 1 neuroscience 1 neuron 1 high-performance-computing 1 classification 1 clustering 1 data-mining 1 data-science 1 data-visualization 1 decision-trees 1 numpy 1 orange 1 orange3 1 pandas 1 climate 1
Languages
C++ 4 C 4 Java 3 Python 3 Groovy 1 Shell 1 Perl 1
Most Issues and Pull Requests
nrnhines nrnhines 642 bentsherman bentsherman 612 akohlmey akohlmey 525 alkino alkino 472 biagas biagas 457 jcgoran jcgoran 444 alexsavulescu alexsavulescu 426 jcfr jcfr 423 ramcdougal ramcdougal 420 dependabot[bot] dependabot[bot] 404 justinprivitera justinprivitera 380 pramodk pramodk 371 pditommaso pditommaso 370 paulwessel paulwessel 351 lassoan lassoan 303 mcovarr mcovarr 286 afni-rickr afni-rickr 262 1uc 1uc 244 markcmiller86 markcmiller86 241 olupton olupton 227 seisman seisman 223 cyrush cyrush 220 joa-quim joa-quim 220 jorgee jorgee 204 janezd janezd 201 rbdavis rbdavis 181 brugger1 brugger1 175 gbggrant gbggrant 171 esteban82 esteban82 167 slicer-app[bot] slicer-app[bot] 160
Committers
dependabot[bot] 7 unknown 4 bernhard m. wiedemann 3 matthew woehlke 3 matt mccormick 3 tom fogal 3 kenneth moreland 3 zach mullen 3 julien nabet 3 andy cedilnik 3 zack galbreath 3 burlen loring 3 pablo hernandez-cerdan 3 karthik krishnan 3 tim gates 3 max smolens 3 david allemang 3 stephen aylward 3 andrew bauer 3 lucas gandel 3 hans johnson 3 shelly belsky 3 shreeraj jadhav 3 jon haitz legarreta gorroƱo 3 yumin yuan 3 julien finet 3 julien schueller 3 hua yang 3 christoph junghans 3 kent williams 3
Most Commits
axel kohlmeyer 17,652 paul wessel 15,939 rwcox 13,288 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 jean-christophe fillion-robin 7,236 berk geveci 6,819 andy cedilnik 6,690 ben boeckel 6,469 brad king 6,426 paolo di tommaso 6,291 sebastien barre 5,806 kitware robot 5,416 eric brugger 5,272 will schroeder 5,242 bernd wiswedel 4,416 joaquim luis 4,298 steve pieper 3,945 david gobbi 3,901 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 rick reynolds 3,343 hess 3,284 andras lasso 3,087 mathieu malaterre 3,058 francois bertel 2,958 amy squillacote 2,823 mrneont 2,728
Direct Dependencies
actions:actions/checkout 11 actions:actions/upload-artifact 7 pypi:numpy 6 actions:actions/setup-python 6 pypi:sphinx 5 docker:ubuntu 5 actions:actions/download-artifact 4 pypi:packaging 4 pypi:setuptools 4 pypi:sphinx_rtd_theme 4 pypi:wheel 4 pypi:scipy 3 actions:actions/setup-java 3 pypi:requests 3 pypi:pandas 3 pypi:pytest 3 pypi:pygments 3 pypi:myst-parser 3 pypi:networkx 3 pypi:pyyaml 3 pypi:cython 2 pypi:matplotlib 2 actions:pypa/gh-action-pypi-publish 2 pypi:certifi 2 pypi:lxml 2 pypi:python-dateutil 2 pypi:psutil 2 pypi:platformdirs 2 pypi:sphinx-design 2 actions:shogo82148/actions-upload-release-asset 2
Repository Owners
ESCOMP ESCOMP 1 imagej imagej 1 visit-dav visit-dav 1 gromacs gromacs 1 knime knime 1 GenericMappingTools GenericMappingTools 1 vtk vtk 1 paraview paraview 1 rachis-org rachis-org 1 neuronsimulator neuronsimulator 1 trinityrnaseq trinityrnaseq 1 samtools samtools 1 cytoscape cytoscape 1 broadinstitute broadinstitute 1 biolab biolab 1 lammps lammps 1 Slicer Slicer 1 BenLangmead BenLangmead 1 afni afni 1 nextflow-io nextflow-io 1
Repository Hosts
GitHub 17 gitlab.kitware.com 2 gitlab.com 1
Statistics

  • Projects: -4
  • Last updated: over 1 year ago