Collections: Critical open source scientific software
https://github.com/samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Last synced: 29 Sep 2026
Keywords
bioinformatics
3
simulation
3
python
3
visualization
3
c-plus-plus
2
image-processing
2
machine-learning
2
hpc
2
genomics
2
plotting
1
random-forest
1
regression
1
scikit-learn
1
scipy
1
visual-programming
1
molecular dynamics
1
genome
1
c
1
earth-science
1
generic-mapping-tools
1
geophysics
1
geospatial
1
mapping
1
kokkos
1
gatk
1
lammps
1
molecular-dynamics
1
dna
1
high-performance-computing
1
neuron
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
julien schueller
3
hans johnson
3
kent williams
3
shelly belsky
3
andy cedilnik
3
zach mullen
3
matthew woehlke
3
david allemang
3
luis ibanez
3
julien nabet
3
burlen loring
3
andrew bauer
3
jean-christophe fillion-robin
3
zack galbreath
3
dave partyka
3
yumin yuan
3
lucas gandel
3
jon haitz legarreta gorroño
3
julien finet
3
alexy pellegrini
3
jim miller
3
karthik krishnan
3
bill lorensen
3
mathieu malaterre
3
brad davis
3
max smolens
3
cory quammen
3
hank childs
3
Most Commits
axel kohlmeyer
17,652
paul wessel
15,939
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
robert cox
8,012
jean-christophe fillion-robin
7,236
berk geveci
6,815
andy cedilnik
6,690
ben boeckel
6,466
brad king
6,426
paolo di tommaso
6,222
sebastien barre
5,806
kitware robot
5,387
rick reynolds
5,286
eric brugger
5,270
will schroeder
5,242
bernd wiswedel
4,416
joaquim luis
4,285
steve pieper
3,945
david gobbi
3,901
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
hess
3,284
mathieu malaterre
3,058
andras lasso
3,033
francois bertel
2,958
amy squillacote
2,823
janezd
2,685
Direct Dependencies
actions:actions/checkout
11
actions:actions/upload-artifact
7
actions:actions/setup-python
6
pypi:sphinx
5
pypi:numpy
5
pypi:wheel
4
pypi:setuptools
4
pypi:pyyaml
4
actions:actions/download-artifact
4
docker:ubuntu
4
pypi:sphinx_rtd_theme
4
pypi:pandas
3
pypi:packaging
3
actions:actions/setup-java
3
pypi:networkx
3
pypi:pygments
3
pypi:myst-parser
3
pypi:docutils
3
pypi:Sphinx
3
pypi:sphinx-design
3
pypi:pytest
3
pypi:sphinx-notfound-page
3
pypi:matplotlib
2
pypi:httpx
2
actions:pypa/gh-action-pypi-publish
2
actions:shogo82148/actions-upload-release-asset
2
actions:styfle/cancel-workflow-action
2
pypi:lxml
2
actions:codespell-project/actions-codespell
2
pypi:sphinxcontrib-jquery
2
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: over 1 year ago