Collections: Critical open source scientific software
https://github.com/samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Last synced: 13 Aug 2026
Keywords
python
3
simulation
3
bioinformatics
3
visualization
3
image-processing
2
genomics
2
c-plus-plus
2
machine-learning
2
hpc
2
molecular-dynamics
1
lammps
1
dna
1
kokkos
1
gatk
1
genome
1
vtk
1
ngs
1
tractography
1
science
1
sequencing
1
spark
1
paraview
1
database
1
integration
1
open-source
1
tool-blending
1
workflow
1
hacktoberfest
1
climate
1
data-analysis
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
shreeraj jadhav
3
max smolens
3
julien schueller
3
stephen aylward
3
david stoup
3
tim thirion
3
karthik krishnan
3
bernhard m. wiedemann
3
shelly belsky
3
kenneth moreland
3
alexy pellegrini
3
lucas gandel
3
cory quammen
3
matthew woehlke
3
kent williams
3
luis ibanez
3
dave partyka
3
yumin yuan
3
jean-christophe fillion-robin
3
zack galbreath
3
brad davis
3
sebastien barre
3
julien nabet
3
andy cedilnik
3
matthew bowman
3
hank childs
3
sankhesh jhaveri
3
zach mullen
3
Most Commits
axel kohlmeyer
17,500
paul wessel
15,939
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
robert cox
8,012
jean-christophe fillion-robin
7,204
berk geveci
6,815
andy cedilnik
6,690
ben boeckel
6,447
brad king
6,426
paolo di tommaso
6,198
sebastien barre
5,806
kitware robot
5,336
rick reynolds
5,286
eric brugger
5,268
will schroeder
5,242
bernd wiswedel
4,416
joaquim luis
4,285
steve pieper
3,934
david gobbi
3,901
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
hess
3,284
mathieu malaterre
3,058
andras lasso
2,969
francois bertel
2,958
amy squillacote
2,823
janezd
2,682
Direct Dependencies
actions:actions/checkout
11
actions:actions/upload-artifact
7
pypi:sphinx
6
actions:actions/setup-python
6
docker:ubuntu
4
pypi:sphinx_rtd_theme
4
pypi:numpy
4
pypi:myst-parser
3
actions:actions/download-artifact
3
actions:actions/setup-java
3
pypi:pytest
3
pypi:packaging
3
pypi:setuptools
3
pypi:wheel
3
pypi:networkx
3
pypi:pandas
2
pypi:lxml
2
pypi:Sphinx
2
pypi:sphinx-copybutton
2
pypi:matplotlib
2
maven:commons-io:commons-io
2
pypi:pygments
2
pypi:mpi4py
2
pypi:sphinx-notfound-page
2
pypi:cython
2
pypi:pyyaml
2
actions:styfle/cancel-workflow-action
2
pypi:sphinx-design
2
actions:shogo82148/actions-upload-release-asset
2
actions:docker/login-action
1
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: over 1 year ago