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Summary

An open API service for producing an overview of a list of open source projects.

Collections: Critical open source scientific software

https://github.com/Slicer/Slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 23 Sep 2026

https://github.com/biolab/orange3

šŸŠ :bar_chart: :bulb: Orange: Interactive data analysis

classification clustering data-mining data-science data-visualization decision-trees machine-learning numpy orange orange3 pandas plotting python random-forest regression scikit-learn scipy visual-programming visualization

Last synced: 23 Sep 2026

https://github.com/neuronsimulator/nrn

NEURON Simulator

high-performance-computing neuron neuroscience simulation

Last synced: 23 Sep 2026

Keywords
bioinformatics 3 visualization 3 python 3 simulation 3 hpc 2 genomics 2 c-plus-plus 2 image-processing 2 machine-learning 2 medical-imaging 1 national-institutes-of-health 1 neuroimaging 1 nih 1 medical-image-computing 1 kitware 1 qt 1 itk 1 registration 1 segmentation 1 tcia-dac 1 tractography 1 vtk 1 paraview 1 classification 1 clustering 1 data-mining 1 data-science 1 data-visualization 1 decision-trees 1 c 1
Languages
C++ 4 C 4 Java 3 Python 3 Groovy 1 Shell 1 Perl 1
Most Issues and Pull Requests
bentsherman bentsherman 543 akohlmey akohlmey 501 biagas biagas 441 jcfr jcfr 423 jcgoran jcgoran 375 justinprivitera justinprivitera 362 dependabot[bot] dependabot[bot] 359 paulwessel paulwessel 351 alkino alkino 347 pditommaso pditommaso 347 mcovarr mcovarr 283 nrnhines nrnhines 270 lassoan lassoan 269 afni-rickr afni-rickr 256 markcmiller86 markcmiller86 237 1uc 1uc 233 seisman seisman 219 joa-quim joa-quim 215 cyrush cyrush 214 jorgee jorgee 192 janezd janezd 191 rbdavis rbdavis 181 gbggrant gbggrant 171 brugger1 brugger1 169 slicer-app[bot] slicer-app[bot] 159 ramcdougal ramcdougal 156 fischer-ncar fischer-ncar 152 adamrtalbot adamrtalbot 138 esteban82 esteban82 136 jamesobutler jamesobutler 126
Committers
dependabot[bot] 7 unknown 4 jim miller 3 tom fogal 3 david stoup 3 burlen loring 3 yumin yuan 3 hua yang 3 andy cedilnik 3 kent williams 3 julien schueller 3 shreeraj jadhav 3 bill lorensen 3 jon haitz legarreta gorroƱo 3 julien finet 3 matthew bowman 3 tim gates 3 shelly belsky 3 tim thirion 3 casey goodlett 3 jean-christophe fillion-robin 3 lucas gandel 3 brad davis 3 hans johnson 3 pablo hernandez-cerdan 3 kenneth moreland 3 johan andruejol 3 hank childs 3 bernhard m. wiedemann 3 matthew woehlke 3
Most Commits
axel kohlmeyer 17,652 paul wessel 15,939 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 robert cox 8,012 jean-christophe fillion-robin 7,204 berk geveci 6,815 andy cedilnik 6,690 ben boeckel 6,466 brad king 6,426 paolo di tommaso 6,222 sebastien barre 5,806 kitware robot 5,380 rick reynolds 5,286 eric brugger 5,270 will schroeder 5,242 bernd wiswedel 4,416 joaquim luis 4,285 steve pieper 3,934 david gobbi 3,901 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 hess 3,284 mathieu malaterre 3,058 andras lasso 2,981 francois bertel 2,958 amy squillacote 2,823 janezd 2,685
Direct Dependencies
actions:actions/checkout 11 actions:actions/upload-artifact 7 actions:actions/setup-python 6 pypi:sphinx 5 pypi:numpy 5 pypi:pyyaml 4 docker:ubuntu 4 actions:actions/download-artifact 4 pypi:setuptools 4 pypi:wheel 4 pypi:sphinx_rtd_theme 4 pypi:pandas 3 pypi:packaging 3 pypi:sphinx-notfound-page 3 pypi:sphinx-design 3 pypi:networkx 3 pypi:Sphinx 3 pypi:pytest 3 actions:actions/setup-java 3 pypi:pygments 3 pypi:myst-parser 3 pypi:docutils 3 pypi:httpx 2 pypi:matplotlib 2 actions:pypa/gh-action-pypi-publish 2 pypi:lxml 2 pypi:requests 2 pypi:scipy 2 pypi:cython 2 pypi:pip 2
Repository Owners
GenericMappingTools GenericMappingTools 1 afni afni 1 vtk vtk 1 visit-dav visit-dav 1 Slicer Slicer 1 paraview paraview 1 biolab biolab 1 gromacs gromacs 1 neuronsimulator neuronsimulator 1 trinityrnaseq trinityrnaseq 1 broadinstitute broadinstitute 1 ESCOMP ESCOMP 1 lammps lammps 1 BenLangmead BenLangmead 1 rachis-org rachis-org 1 imagej imagej 1 knime knime 1 cytoscape cytoscape 1 samtools samtools 1 nextflow-io nextflow-io 1
Repository Hosts
GitHub 17 gitlab.kitware.com 2 gitlab.com 1
Statistics

  • Projects: -4
  • Last updated: over 1 year ago