Data

Tools

Indexes

Applications

Experiments

Summary

An open API service for producing an overview of a list of open source projects.

Collections: Critical open source scientific software

https://github.com/GenericMappingTools/gmt

The Generic Mapping Tools

c earth-science generic-mapping-tools geophysics geospatial mapping

Last synced: 13 Aug 2026

https://github.com/samtools/samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

Last synced: 13 Aug 2026

https://github.com/afni/afni

Official AFNI source and documentation

anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization

Last synced: 13 Aug 2026

https://github.com/visit-dav/visit

VisIt - Visualization and Data Analysis for Mesh-based Scientific Data

data-analysis data-viz hpc python radiuss scientific-computing scientific-visualization visualization

Last synced: 13 Aug 2026

Keywords
python 3 simulation 3 bioinformatics 3 visualization 3 image-processing 2 genomics 2 c-plus-plus 2 machine-learning 2 hpc 2 molecular-dynamics 1 lammps 1 dna 1 kokkos 1 gatk 1 genome 1 vtk 1 ngs 1 tractography 1 science 1 sequencing 1 spark 1 paraview 1 database 1 integration 1 open-source 1 tool-blending 1 workflow 1 hacktoberfest 1 climate 1 data-analysis 1
Languages
C++ 4 C 4 Python 3 Java 3 Groovy 1 Shell 1 Perl 1
Most Issues and Pull Requests
bentsherman bentsherman 497 akohlmey akohlmey 475 biagas biagas 428 jcfr jcfr 423 jcgoran jcgoran 376 dependabot[bot] dependabot[bot] 358 paulwessel paulwessel 351 alkino alkino 348 justinprivitera justinprivitera 335 pditommaso pditommaso 314 mcovarr mcovarr 277 lassoan lassoan 258 nrnhines nrnhines 256 afni-rickr afni-rickr 246 1uc 1uc 233 markcmiller86 markcmiller86 224 cyrush cyrush 203 joa-quim joa-quim 200 seisman seisman 195 janezd janezd 190 rbdavis rbdavis 181 jorgee jorgee 174 gbggrant gbggrant 171 brugger1 brugger1 166 slicer-app[bot] slicer-app[bot] 156 fischer-ncar fischer-ncar 147 ramcdougal ramcdougal 145 adamrtalbot adamrtalbot 133 slicerbot slicerbot 124 jamesobutler jamesobutler 120
Committers
dependabot[bot] 7 unknown 4 shreeraj jadhav 3 max smolens 3 julien schueller 3 stephen aylward 3 david stoup 3 tim thirion 3 karthik krishnan 3 bernhard m. wiedemann 3 shelly belsky 3 kenneth moreland 3 alexy pellegrini 3 lucas gandel 3 cory quammen 3 matthew woehlke 3 kent williams 3 luis ibanez 3 dave partyka 3 yumin yuan 3 jean-christophe fillion-robin 3 zack galbreath 3 brad davis 3 sebastien barre 3 julien nabet 3 andy cedilnik 3 matthew bowman 3 hank childs 3 sankhesh jhaveri 3 zach mullen 3
Most Commits
axel kohlmeyer 17,500 paul wessel 15,939 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 robert cox 8,012 jean-christophe fillion-robin 7,204 berk geveci 6,815 andy cedilnik 6,690 ben boeckel 6,447 brad king 6,426 paolo di tommaso 6,198 sebastien barre 5,806 kitware robot 5,336 rick reynolds 5,286 eric brugger 5,268 will schroeder 5,242 bernd wiswedel 4,416 joaquim luis 4,285 steve pieper 3,934 david gobbi 3,901 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 hess 3,284 mathieu malaterre 3,058 andras lasso 2,969 francois bertel 2,958 amy squillacote 2,823 janezd 2,682
Direct Dependencies
actions:actions/checkout 11 actions:actions/upload-artifact 7 pypi:sphinx 6 actions:actions/setup-python 6 docker:ubuntu 4 pypi:sphinx_rtd_theme 4 pypi:numpy 4 pypi:myst-parser 3 actions:actions/download-artifact 3 actions:actions/setup-java 3 pypi:pytest 3 pypi:packaging 3 pypi:setuptools 3 pypi:wheel 3 pypi:networkx 3 pypi:pandas 2 pypi:lxml 2 pypi:Sphinx 2 pypi:sphinx-copybutton 2 pypi:matplotlib 2 maven:commons-io:commons-io 2 pypi:pygments 2 pypi:mpi4py 2 pypi:sphinx-notfound-page 2 pypi:cython 2 pypi:pyyaml 2 actions:styfle/cancel-workflow-action 2 pypi:sphinx-design 2 actions:shogo82148/actions-upload-release-asset 2 actions:docker/login-action 1
Repository Owners
visit-dav visit-dav 1 neuronsimulator neuronsimulator 1 Slicer Slicer 1 lammps lammps 1 broadinstitute broadinstitute 1 vtk vtk 1 trinityrnaseq trinityrnaseq 1 paraview paraview 1 knime knime 1 rachis-org rachis-org 1 ESCOMP ESCOMP 1 gromacs gromacs 1 afni afni 1 GenericMappingTools GenericMappingTools 1 biolab biolab 1 cytoscape cytoscape 1 imagej imagej 1 BenLangmead BenLangmead 1 samtools samtools 1 nextflow-io nextflow-io 1
Repository Hosts
GitHub 17 gitlab.kitware.com 2 gitlab.com 1
Statistics

  • Projects: -4
  • Last updated: over 1 year ago