Collections: Critical open source scientific software
https://github.com/cytoscape/cytoscape
Cytoscape: an open source platform for network analysis and visualization
Last synced: 04 Jul 2026
Keywords
python
3
bioinformatics
3
simulation
3
visualization
3
genomics
2
hpc
2
c-plus-plus
2
machine-learning
2
image-processing
2
registration
1
plotting
1
qt
1
random-forest
1
nih
1
regression
1
scikit-learn
1
scipy
1
neuroimaging
1
visual-programming
1
national-institutes-of-health
1
paraview
1
3d-printing
1
3d-slicer
1
medical-imaging
1
computed-tomography
1
image-guided-therapy
1
medical-image-computing
1
itk
1
kitware
1
kokkos
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
zach mullen
3
tim gates
3
shreeraj jadhav
3
matthew bowman
3
david allemang
3
brad davis
3
jon haitz legarreta gorroño
3
julien schueller
3
tim thirion
3
tom fogal
3
lucas gandel
3
david stoup
3
alexy pellegrini
3
kenneth moreland
3
casey goodlett
3
johan andruejol
3
jean-christophe fillion-robin
3
shelly belsky
3
jim miller
3
luis ibanez
3
christoph junghans
3
bernhard m. wiedemann
3
andrew bauer
3
dave partyka
3
hank childs
3
julien nabet
3
cory quammen
3
mathieu malaterre
3
Most Commits
axel kohlmeyer
16,682
paul wessel
15,939
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
robert cox
8,012
jean-christophe fillion-robin
7,204
berk geveci
6,726
andy cedilnik
6,690
brad king
6,426
ben boeckel
6,395
paolo di tommaso
5,976
sebastien barre
5,806
eric brugger
5,260
rick reynolds
5,249
will schroeder
5,242
kitware robot
5,166
bernd wiswedel
4,416
joaquim luis
4,210
steve pieper
3,918
david gobbi
3,898
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
hess
3,284
mathieu malaterre
3,058
francois bertel
2,958
andras lasso
2,910
amy squillacote
2,823
remko scharroo
2,680
Direct Dependencies
actions:actions/checkout
8
actions:actions/upload-artifact
6
pypi:sphinx
5
docker:ubuntu
4
actions:actions/setup-python
4
actions:actions/setup-java
3
pypi:numpy
3
pypi:sphinx_rtd_theme
3
pypi:setuptools
3
pypi:wheel
3
pypi:mpi4py
2
pypi:pytest
2
pypi:packaging
2
actions:styfle/cancel-workflow-action
2
pypi:Sphinx
2
actions:actions/download-artifact
2
actions:shogo82148/actions-upload-release-asset
2
pypi:sphinx-notfound-page
2
maven:commons-io:commons-io
2
pypi:build
2
pypi:pip
2
pypi:myst-parser
2
pypi:Pygments
2
actions:peter-evans/create-pull-request
1
conda:ipython
1
pypi:linkify-it-py
1
conda:filelock
1
conda:docker-py
1
conda:datalad
1
conda:cmake
1
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: about 1 year ago