Collections: Critical open source scientific software
https://github.com/cytoscape/cytoscape
Cytoscape: an open source platform for network analysis and visualization
Last synced: 18 Aug 2026
Keywords
python
3
simulation
3
bioinformatics
3
visualization
3
genomics
2
hpc
2
c-plus-plus
2
machine-learning
2
image-processing
2
3d-printing
1
neuroscience
1
neuron
1
high-performance-computing
1
spark
1
sequencing
1
science
1
ngs
1
genome
1
3d-slicer
1
computed-tomography
1
image-guided-therapy
1
itk
1
kitware
1
medical-image-computing
1
medical-imaging
1
national-institutes-of-health
1
neuroimaging
1
nih
1
data-analysis
1
data-viz
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
matt mccormick
3
kenneth moreland
3
casey goodlett
3
bernhard m. wiedemann
3
pablo hernandez-cerdan
3
sankhesh jhaveri
3
andrew bauer
3
hua yang
3
andy cedilnik
3
matthew bowman
3
zach mullen
3
julien schueller
3
david stoup
3
shreeraj jadhav
3
cory quammen
3
johan andruejol
3
max smolens
3
stephen aylward
3
kent williams
3
jean-christophe fillion-robin
3
shelly belsky
3
julien finet
3
matthew woehlke
3
luis ibanez
3
jim miller
3
dave partyka
3
bill lorensen
3
hans johnson
3
Most Commits
axel kohlmeyer
17,642
paul wessel
15,939
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
robert cox
8,012
jean-christophe fillion-robin
7,204
berk geveci
6,815
andy cedilnik
6,690
ben boeckel
6,448
brad king
6,426
paolo di tommaso
6,204
sebastien barre
5,806
kitware robot
5,343
rick reynolds
5,286
eric brugger
5,268
will schroeder
5,242
bernd wiswedel
4,416
joaquim luis
4,285
steve pieper
3,934
david gobbi
3,901
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
hess
3,284
mathieu malaterre
3,058
andras lasso
2,969
francois bertel
2,958
amy squillacote
2,823
janezd
2,682
Direct Dependencies
actions:actions/checkout
11
actions:actions/upload-artifact
7
pypi:sphinx
6
actions:actions/setup-python
6
docker:ubuntu
4
pypi:sphinx_rtd_theme
4
pypi:numpy
4
pypi:pytest
3
pypi:setuptools
3
pypi:wheel
3
actions:actions/setup-java
3
pypi:packaging
3
pypi:networkx
3
pypi:myst-parser
3
actions:actions/download-artifact
3
pypi:Sphinx
2
pypi:pygments
2
pypi:matplotlib
2
pypi:pandas
2
pypi:pyyaml
2
pypi:cython
2
maven:commons-io:commons-io
2
actions:shogo82148/actions-upload-release-asset
2
pypi:sphinx-design
2
actions:styfle/cancel-workflow-action
2
pypi:sphinx-notfound-page
2
pypi:mpi4py
2
pypi:lxml
2
pypi:sphinx-copybutton
2
maven:com.esotericsoftware:kryo
1
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: over 1 year ago