Collections: Critical open source scientific software
https://github.com/cytoscape/cytoscape
Cytoscape: an open source platform for network analysis and visualization
Last synced: 29 Mar 2026
Keywords
visualization
3
python
3
bioinformatics
3
simulation
3
machine-learning
2
image-processing
2
c-plus-plus
2
hpc
2
genomics
2
mapping
1
geospatial
1
geophysics
1
generic-mapping-tools
1
earth-science
1
c
1
visual-programming
1
scipy
1
anatomical-mri
1
dwi
1
fmri
1
fmri-analysis
1
fmri-data-analysis
1
mri
1
quality-control
1
statistical-inference
1
statistics
1
kokkos
1
lammps
1
molecular-dynamics
1
database
1
Most Issues and Pull Requests
Committers
dependabot[bot]
6
unknown
4
alexy pellegrini
3
casey goodlett
3
andrew bauer
3
matt mccormick
3
zach mullen
3
johan andruejol
3
matthew woehlke
3
max smolens
3
brad davis
3
burlen loring
3
bernhard m. wiedemann
3
julien finet
3
tim gates
3
kent williams
3
shreeraj jadhav
3
karthik krishnan
3
shelly belsky
3
sankhesh jhaveri
3
bill lorensen
3
yumin yuan
3
jean-christophe fillion-robin
3
pablo hernandez-cerdan
3
andy cedilnik
3
tom fogal
3
sebastien barre
3
hank childs
3
david allemang
3
jim miller
3
Most Commits
paul wessel
15,939
axel kohlmeyer
15,251
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
robert cox
8,008
jean-christophe fillion-robin
7,174
berk geveci
6,702
andy cedilnik
6,690
brad king
6,426
ben boeckel
6,381
paolo di tommaso
5,976
sebastien barre
5,806
eric brugger
5,253
will schroeder
5,236
rick reynolds
5,181
kitware robot
5,017
bernd wiswedel
4,415
joaquim luis
4,175
steve pieper
3,917
david gobbi
3,890
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
hess
3,284
mathieu malaterre
3,058
francois bertel
2,958
andras lasso
2,872
amy squillacote
2,823
remko scharroo
2,679
Direct Dependencies
actions:actions/checkout
8
actions:actions/upload-artifact
6
pypi:sphinx
5
docker:ubuntu
4
actions:actions/setup-python
4
pypi:setuptools
3
pypi:wheel
3
pypi:sphinx_rtd_theme
3
actions:actions/setup-java
3
pypi:numpy
3
pypi:pip
2
maven:commons-io:commons-io
2
pypi:Pygments
2
pypi:Sphinx
2
pypi:build
2
actions:styfle/cancel-workflow-action
2
pypi:mpi4py
2
pypi:pytest
2
pypi:packaging
2
pypi:sphinx-notfound-page
2
pypi:myst-parser
2
actions:actions/download-artifact
2
actions:shogo82148/actions-upload-release-asset
2
conda:docker-py
1
conda:datalad
1
conda:cmake
1
conda:cloud_sptheme
1
conda:filelock
1
conda:ipython
1
conda:black
1
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: 12 months ago