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Summary

An open API service for producing an overview of a list of open source projects.

Collections: Critical open source scientific software

https://github.com/visit-dav/visit

VisIt - Visualization and Data Analysis for Mesh-based Scientific Data

data-analysis data-viz hpc python radiuss scientific-computing scientific-visualization visualization

Last synced: 12 Sep 2026

https://github.com/trinityrnaseq/trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

Last synced: 12 Sep 2026

https://github.com/afni/afni

Official AFNI source and documentation

anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization

Last synced: 12 Sep 2026

https://github.com/nextflow-io/nextflow

A DSL for data-driven computational pipelines

aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine

Last synced: 12 Sep 2026

Keywords
python 3 bioinformatics 3 visualization 3 simulation 3 hpc 2 machine-learning 2 c-plus-plus 2 image-processing 2 genomics 2 fmri-analysis 1 fmri 1 dwi 1 anatomical-mri 1 workflow 1 tool-blending 1 open-source 1 integration 1 database 1 fmri-data-analysis 1 mri 1 quality-control 1 statistical-inference 1 statistics 1 c 1 earth-science 1 generic-mapping-tools 1 geophysics 1 geospatial 1 mapping 1 classification 1
Languages
C++ 4 C 4 Python 3 Java 3 Groovy 1 Shell 1 Perl 1
Most Issues and Pull Requests
bentsherman bentsherman 523 akohlmey akohlmey 500 biagas biagas 435 jcfr jcfr 423 jcgoran jcgoran 375 justinprivitera justinprivitera 360 dependabot[bot] dependabot[bot] 358 paulwessel paulwessel 351 alkino alkino 347 pditommaso pditommaso 337 mcovarr mcovarr 283 lassoan lassoan 266 nrnhines nrnhines 265 afni-rickr afni-rickr 253 markcmiller86 markcmiller86 235 1uc 1uc 233 cyrush cyrush 212 seisman seisman 211 joa-quim joa-quim 210 janezd janezd 190 jorgee jorgee 187 rbdavis rbdavis 181 gbggrant gbggrant 171 brugger1 brugger1 168 slicer-app[bot] slicer-app[bot] 159 ramcdougal ramcdougal 156 fischer-ncar fischer-ncar 148 adamrtalbot adamrtalbot 138 esteban82 esteban82 128 jamesobutler jamesobutler 125
Committers
dependabot[bot] 7 unknown 4 julien schueller 3 matt mccormick 3 kent williams 3 tim gates 3 shreeraj jadhav 3 johan andruejol 3 tim thirion 3 zach mullen 3 karthik krishnan 3 cory quammen 3 mathieu malaterre 3 matthew woehlke 3 sankhesh jhaveri 3 bill lorensen 3 luis ibanez 3 pablo hernandez-cerdan 3 jim miller 3 yumin yuan 3 jean-christophe fillion-robin 3 sebastien barre 3 andrew bauer 3 max smolens 3 lucas gandel 3 brad davis 3 hank childs 3 kenneth moreland 3 bernhard m. wiedemann 3 zack galbreath 3
Most Commits
axel kohlmeyer 17,652 paul wessel 15,939 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 robert cox 8,012 jean-christophe fillion-robin 7,204 berk geveci 6,815 andy cedilnik 6,690 ben boeckel 6,466 brad king 6,426 paolo di tommaso 6,222 sebastien barre 5,806 kitware robot 5,370 rick reynolds 5,286 eric brugger 5,269 will schroeder 5,242 bernd wiswedel 4,416 joaquim luis 4,285 steve pieper 3,934 david gobbi 3,901 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 hess 3,284 mathieu malaterre 3,058 andras lasso 2,981 francois bertel 2,958 amy squillacote 2,823 janezd 2,682
Direct Dependencies
actions:actions/checkout 11 actions:actions/upload-artifact 7 actions:actions/setup-python 6 pypi:sphinx 5 pypi:numpy 5 pypi:setuptools 4 pypi:wheel 4 pypi:pyyaml 4 actions:actions/download-artifact 4 pypi:sphinx_rtd_theme 4 docker:ubuntu 4 pypi:docutils 3 pypi:pandas 3 pypi:pytest 3 pypi:networkx 3 pypi:sphinx-design 3 pypi:pygments 3 pypi:sphinx-notfound-page 3 actions:actions/setup-java 3 pypi:packaging 3 pypi:Sphinx 3 pypi:myst-parser 3 pypi:mpi4py 2 pypi:platformdirs 2 pypi:psutil 2 pypi:python-dateutil 2 pypi:lxml 2 pypi:cython 2 pypi:scipy 2 pypi:requests 2
Repository Owners
visit-dav visit-dav 1 trinityrnaseq trinityrnaseq 1 imagej imagej 1 lammps lammps 1 paraview paraview 1 rachis-org rachis-org 1 ESCOMP ESCOMP 1 BenLangmead BenLangmead 1 broadinstitute broadinstitute 1 knime knime 1 afni afni 1 GenericMappingTools GenericMappingTools 1 biolab biolab 1 gromacs gromacs 1 vtk vtk 1 neuronsimulator neuronsimulator 1 Slicer Slicer 1 cytoscape cytoscape 1 samtools samtools 1 nextflow-io nextflow-io 1
Repository Hosts
GitHub 17 gitlab.kitware.com 2 gitlab.com 1
Statistics

  • Projects: -4
  • Last updated: over 1 year ago