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Summary

An open API service for producing an overview of a list of open source projects.

Collections: Critical open source scientific software

https://github.com/visit-dav/visit

VisIt - Visualization and Data Analysis for Mesh-based Scientific Data

data-analysis data-viz hpc python radiuss scientific-computing scientific-visualization visualization

Last synced: 17 Aug 2026

https://github.com/broadinstitute/gatk

Official code repository for GATK versions 4 and up

bioinformatics dna gatk genome genomics ngs science sequencing spark

Last synced: 17 Aug 2026

https://github.com/trinityrnaseq/trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

Last synced: 17 Aug 2026

https://github.com/afni/afni

Official AFNI source and documentation

anatomical-mri dwi fmri fmri-analysis fmri-data-analysis mri quality-control statistical-inference statistics visualization

Last synced: 17 Aug 2026

Keywords
simulation 3 visualization 3 bioinformatics 3 python 3 c-plus-plus 2 image-processing 2 hpc 2 machine-learning 2 genomics 2 spark 1 sequencing 1 high-performance-computing 1 neuron 1 science 1 ngs 1 neuroscience 1 genome 1 3d-printing 1 3d-slicer 1 computed-tomography 1 image-guided-therapy 1 itk 1 kitware 1 medical-image-computing 1 medical-imaging 1 national-institutes-of-health 1 neuroimaging 1 nih 1 classification 1 clustering 1
Languages
C++ 4 C 4 Java 3 Python 3 Groovy 1 Shell 1 Perl 1
Most Issues and Pull Requests
bentsherman bentsherman 497 akohlmey akohlmey 479 biagas biagas 428 jcfr jcfr 423 jcgoran jcgoran 376 dependabot[bot] dependabot[bot] 358 paulwessel paulwessel 351 alkino alkino 348 justinprivitera justinprivitera 342 pditommaso pditommaso 320 mcovarr mcovarr 278 nrnhines nrnhines 260 lassoan lassoan 258 afni-rickr afni-rickr 246 1uc 1uc 233 markcmiller86 markcmiller86 229 cyrush cyrush 205 joa-quim joa-quim 200 seisman seisman 195 janezd janezd 190 rbdavis rbdavis 181 jorgee jorgee 174 gbggrant gbggrant 171 brugger1 brugger1 167 slicer-app[bot] slicer-app[bot] 157 ramcdougal ramcdougal 149 fischer-ncar fischer-ncar 147 adamrtalbot adamrtalbot 134 slicerbot slicerbot 124 jamesobutler jamesobutler 120
Committers
dependabot[bot] 7 unknown 4 julien nabet 3 cory quammen 3 matthew bowman 3 jon haitz legarreta gorroño 3 david stoup 3 kent williams 3 matt mccormick 3 mathieu malaterre 3 johan andruejol 3 shelly belsky 3 hua yang 3 max smolens 3 stephen aylward 3 jim miller 3 sebastien barre 3 shreeraj jadhav 3 alexy pellegrini 3 julien finet 3 kenneth moreland 3 julien schueller 3 dave partyka 3 yumin yuan 3 matthew woehlke 3 andrew bauer 3 zack galbreath 3 tim gates 3 david allemang 3 luis ibanez 3
Most Commits
axel kohlmeyer 17,642 paul wessel 15,939 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 robert cox 8,012 jean-christophe fillion-robin 7,204 berk geveci 6,815 andy cedilnik 6,690 ben boeckel 6,448 brad king 6,426 paolo di tommaso 6,204 sebastien barre 5,806 kitware robot 5,343 rick reynolds 5,286 eric brugger 5,268 will schroeder 5,242 bernd wiswedel 4,416 joaquim luis 4,285 steve pieper 3,934 david gobbi 3,901 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 hess 3,284 mathieu malaterre 3,058 andras lasso 2,969 francois bertel 2,958 amy squillacote 2,823 janezd 2,682
Direct Dependencies
actions:actions/checkout 11 actions:actions/upload-artifact 7 pypi:sphinx 6 actions:actions/setup-python 6 docker:ubuntu 4 pypi:sphinx_rtd_theme 4 pypi:numpy 4 pypi:packaging 3 actions:actions/setup-java 3 pypi:myst-parser 3 actions:actions/download-artifact 3 pypi:wheel 3 pypi:setuptools 3 pypi:pytest 3 pypi:networkx 3 pypi:pandas 2 pypi:pyyaml 2 pypi:cython 2 pypi:sphinx-notfound-page 2 maven:commons-io:commons-io 2 pypi:sphinx-copybutton 2 pypi:lxml 2 pypi:sphinx-design 2 pypi:mpi4py 2 pypi:matplotlib 2 pypi:pygments 2 actions:shogo82148/actions-upload-release-asset 2 pypi:Sphinx 2 actions:styfle/cancel-workflow-action 2 maven:org.bdgenomics.adam:adam-core-spark2_ 1
Repository Owners
biolab biolab 1 visit-dav visit-dav 1 broadinstitute broadinstitute 1 neuronsimulator neuronsimulator 1 trinityrnaseq trinityrnaseq 1 Slicer Slicer 1 knime knime 1 cytoscape cytoscape 1 paraview paraview 1 vtk vtk 1 imagej imagej 1 gromacs gromacs 1 rachis-org rachis-org 1 lammps lammps 1 ESCOMP ESCOMP 1 GenericMappingTools GenericMappingTools 1 afni afni 1 BenLangmead BenLangmead 1 samtools samtools 1 nextflow-io nextflow-io 1
Repository Hosts
GitHub 17 gitlab.kitware.com 2 gitlab.com 1
Statistics

  • Projects: -4
  • Last updated: over 1 year ago