Critical open source scientific software: https://github.com/trinityrnaseq/trinityrnaseq
Score: -Infinity
Last synced: about 21 hours ago
JSON representation
Repository metadata:
Trinity RNA-Seq de novo transcriptome assembly
- Host: GitHub
- URL: https://github.com/trinityrnaseq/trinityrnaseq
- Owner: trinityrnaseq
- License: bsd-3-clause
- Created: 2014-08-07T21:22:53.000Z (almost 12 years ago)
- Default Branch: master
- Last Pushed: 2025-02-07T14:46:40.000Z (over 1 year ago)
- Last Synced: 2026-04-01T10:19:26.382Z (about 1 month ago)
- Language: Perl
- Size: 270 MB
- Stars: 886
- Watchers: 55
- Forks: 320
- Open Issues: 307
-
Metadata Files:
- Readme: README
- Changelog: Changelog.txt
- License: LICENSE
Owner metadata:
- Name: trinityrnaseq
- Login: trinityrnaseq
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/8389137?v=4
- Repositories: 48
- Last Synced at: 2024-03-20T07:00:31.766Z
- Profile URL: https://github.com/trinityrnaseq
GitHub Events
Total
- Fork event: 5
- Issue comment event: 40
- Issues event: 24
- Push event: 4
- Watch event: 39
- Total: 112
Last Year
- Fork event: 3
- Issue comment event: 6
- Issues event: 9
- Watch event: 20
- Total: 38
Committers metadata
Last synced: 2 months ago
Total Commits: 1,564
Total Committers: 45
Avg Commits per committer: 34.756
Development Distribution Score (DDS): 0.095
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Brian Haas | b****s@g****m | 1416 |
| Ben Fulton | b****n@i****u | 36 |
| Michael R. Crusoe | c****e@u****u | 21 |
| Jun Aruga | h****y@o****t | 12 |
| jgould | j****d@b****g | 12 |
| Ubuntu | u****u@i****l | 6 |
| Giovanni Marques de Castro | i****g@w****l | 6 |
| Gaurav | G****v@G****l | 4 |
| Giles Hall | g****s@g****m | 3 |
| GeorgescuC | c****g@g****m | 3 |
| perugolate | p****n@f****e | 2 |
| Benjamin Fulton | b****n@c****u | 2 |
| Holger Brandl | b****l@m****e | 2 |
| Ubuntu | u****u@i****l | 2 |
| m-wagner | m****r@z****e | 2 |
| yuragal | y****l@g****m | 2 |
| Jun Aruga | j****a | 2 |
| Jason Stajich | j****h@u****u | 2 |
| Gene Blanchard | g****4@g****m | 2 |
| Alexie Papanicolaou | a****n@g****m | 2 |
| Ben Fulton | b****n@b****t | 1 |
| Jason Travis | j****s@t****g | 1 |
| Nathan T. Weeks | n****s@a****v | 1 |
| Patrick Douglas | p****o@g****m | 1 |
| Thomas William | g****b@f****g | 1 |
| Asma Bankapur | b****r@w****g | 1 |
| lecorguille | l****e@s****r | 1 |
| pol llovet | p****t@g****m | 1 |
| snehring | s****g@i****u | 1 |
| Ubuntu | u****u@i****l | 1 |
| and 15 more... | ||
Issue and Pull Request metadata
Last synced: 3 months ago
Total issues: 174
Total pull requests: 34
Average time to close issues: 5 months
Average time to close pull requests: about 1 month
Total issue authors: 120
Total pull request authors: 16
Average comments per issue: 2.16
Average comments per pull request: 0.94
Merged pull request: 26
Bot issues: 0
Bot pull requests: 0
Past year issues: 10
Past year pull requests: 0
Past year average time to close issues: 29 days
Past year average time to close pull requests: N/A
Past year issue authors: 10
Past year pull request authors: 0
Past year average comments per issue: 0.7
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- brianjohnhaas (32)
- benfulton (11)
- kk86bioinfo (3)
- songmm19900210 (3)
- tomas-pluskal (2)
- ClaSofMag (2)
- charlinap (2)
- bshim181 (2)
- daniellembecker (2)
- terancehhwong (2)
- oliviareg (2)
- macmanes (2)
- Ushaur (2)
- ukleiner (1)
- sammyjava (1)
Top Pull Request Authors
- mr-c (9)
- brianjohnhaas (5)
- g1o (3)
- biocoder (2)
- hyphaltip (2)
- ghost (2)
- nathanweeks (2)
- corburn (1)
- macmanes (1)
- lecorguille (1)
- Perugolate (1)
- raj76 (1)
- sablokgaurav (1)
- biocyberman (1)
- holgerbrandl (1)
Top Issue Labels
- enhancement (17)
- bug (8)
- discussion needed (1)
Top Pull Request Labels
Package metadata
- Total packages: 12
- Total downloads: unknown
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 172
proxy.golang.org: github.com/TRINITYRNASEQ/Trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/TRINITYRNASEQ/Trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-20T09:16:21.626Z (about 2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%
proxy.golang.org: github.com/TRINityRnaseq/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/TRINityRnaseq/trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-20T09:15:06.112Z (about 2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%
proxy.golang.org: github.com/TRINityrnaseq/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/TRINityrnaseq/trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-20T09:13:18.740Z (about 2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%
proxy.golang.org: github.com/TrinityRnaseq/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/TrinityRnaseq/trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-20T09:15:06.689Z (about 2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%
proxy.golang.org: github.com/TRINITYrnaseq/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/TRINITYrnaseq/trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-20T09:15:25.678Z (about 2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%
proxy.golang.org: github.com/TRINITYRNASEQ/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/TRINITYRNASEQ/trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-20T09:15:50.465Z (about 2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.894%
- Average: 5.059%
- Dependent repos count: 5.223%
proxy.golang.org: github.com/Trinityrnaseq/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/Trinityrnaseq/trinityrnaseq#section-documentation
- Licenses:
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-03T12:30:58.311Z (2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.926%
- Average: 5.091%
- Dependent repos count: 5.257%
proxy.golang.org: github.com/trinityrnaseq/trinityrnaseq
- Homepage:
- Documentation: https://pkg.go.dev/github.com/trinityrnaseq/trinityrnaseq#section-documentation
- Licenses: bsd-3-clause
- Latest release: v2.13.0+incompatible (published almost 5 years ago)
- Last Synced: 2026-03-14T12:02:28.129Z (2 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 5.369%
- Average: 5.549%
- Dependent repos count: 5.729%
ubuntu-24.04: trinityrnaseq
- Homepage: https://github.com/trinityrnaseq/trinityrnaseq
- Licenses:
- Latest release: 2.15.1+dfsg-5build1 (published 3 months ago)
- Last Synced: 2026-03-13T03:14:09.733Z (2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
ubuntu-24.10: trinityrnaseq
- Homepage: https://github.com/trinityrnaseq/trinityrnaseq
- Licenses: bsd-3-clause
- Latest release: 2.15.1+dfsg-5build1 (published 3 months ago)
- Last Synced: 2026-03-13T14:22:30.620Z (2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
guix: trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
- Homepage: https://github.com/trinityrnaseq/trinityrnaseq/wiki
- Documentation: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n7408
- Licenses: bsd-3
- Latest release: 2.15.2 (published 2 months ago)
- Last Synced: 2026-03-03T00:49:19.521Z (2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
debian-13: trinityrnaseq
- Homepage: https://github.com/trinityrnaseq/trinityrnaseq
- Documentation: https://packages.debian.org/trixie/trinityrnaseq
- Licenses:
- Latest release: 2.15.2+dfsg-1 (published 3 months ago)
- Last Synced: 2026-03-12T19:08:08.297Z (2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
Dependencies
- ubuntu 20.04 build
- trinityrnaseq/trinityrnaseq 2.11.0 build
- ubuntu 18.04 build