Collections: Critical open source scientific software
https://github.com/broadinstitute/gatk
Official code repository for GATK versions 4 and up
bioinformatics dna gatk genome genomics ngs science sequencing spark
Last synced: 14 Nov 2026
Keywords
bioinformatics
3
python
3
simulation
3
visualization
3
c-plus-plus
2
hpc
2
image-processing
2
machine-learning
2
genomics
2
statistics
1
statistical-inference
1
quality-control
1
mri
1
fmri-data-analysis
1
fmri-analysis
1
fmri
1
dwi
1
anatomical-mri
1
computer-vision
1
kokkos
1
lammps
1
molecular-dynamics
1
c
1
earth-science
1
generic-mapping-tools
1
geophysics
1
geospatial
1
mapping
1
classification
1
clustering
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
sebastien barre
3
brad davis
3
bill lorensen
3
alexy pellegrini
3
jim miller
3
yumin yuan
3
zack galbreath
3
julien finet
3
david allemang
3
jean-christophe fillion-robin
3
shreeraj jadhav
3
andrew bauer
3
matthew bowman
3
hans johnson
3
tim gates
3
kenneth moreland
3
kent williams
3
shelly belsky
3
christoph junghans
3
julien nabet
3
david stoup
3
cory quammen
3
tim thirion
3
bernhard m. wiedemann
3
lucas gandel
3
karthik krishnan
3
julien schueller
3
hua yang
3
Most Commits
axel kohlmeyer
17,652
paul wessel
15,939
rwcox
13,288
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
jean-christophe fillion-robin
7,236
berk geveci
6,820
andy cedilnik
6,690
ben boeckel
6,469
brad king
6,426
paolo di tommaso
6,305
sebastien barre
5,806
kitware robot
5,433
eric brugger
5,277
will schroeder
5,242
bernd wiswedel
4,416
joaquim luis
4,301
steve pieper
3,945
david gobbi
3,901
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
rick reynolds
3,359
hess
3,284
andras lasso
3,110
mathieu malaterre
3,058
francois bertel
2,958
amy squillacote
2,823
mrneont
2,760
Direct Dependencies
actions:actions/checkout
10
actions:actions/upload-artifact
7
pypi:numpy
7
actions:actions/setup-python
6
pypi:setuptools
5
pypi:wheel
5
docker:ubuntu
5
pypi:sphinx
5
pypi:sphinx_rtd_theme
4
actions:actions/download-artifact
4
pypi:pyyaml
4
pypi:packaging
4
pypi:sphinx-design
3
pypi:myst-parser
3
pypi:pip
3
pypi:six
3
pypi:docutils
3
pypi:Sphinx
3
pypi:pygments
3
pypi:networkx
3
pypi:sphinx-notfound-page
3
pypi:pandas
3
pypi:requests
3
pypi:scipy
3
pypi:pytest
3
pypi:sphinxcontrib-jquery
2
pypi:python-dateutil
2
pypi:pyparsing
2
actions:actions/setup-java
2
actions:docker/build-push-action
2
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: over 1 year ago