Collections: Critical open source scientific software
https://github.com/broadinstitute/gatk
Official code repository for GATK versions 4 and up
bioinformatics dna gatk genome genomics ngs science sequencing spark
Last synced: 05 Nov 2026
Keywords
bioinformatics
3
simulation
3
python
3
visualization
3
c-plus-plus
2
genomics
2
hpc
2
image-processing
2
machine-learning
2
visual-programming
1
c
1
earth-science
1
generic-mapping-tools
1
geophysics
1
geospatial
1
mapping
1
computer-vision
1
dwi
1
data-analysis
1
data-viz
1
anatomical-mri
1
radiuss
1
scientific-computing
1
scientific-visualization
1
hacktoberfest
1
climate
1
climate-model
1
ncar
1
molecular-dynamics
1
lammps
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
julien finet
3
tim thirion
3
tom fogal
3
jean-christophe fillion-robin
3
cory quammen
3
shelly belsky
3
casey goodlett
3
lucas gandel
3
johan andruejol
3
burlen loring
3
brad davis
3
julien schueller
3
hua yang
3
matt mccormick
3
david stoup
3
yumin yuan
3
bernhard m. wiedemann
3
luis ibanez
3
kent williams
3
stephen aylward
3
alexy pellegrini
3
tim gates
3
zach mullen
3
matthew bowman
3
pablo hernandez-cerdan
3
kenneth moreland
3
julien nabet
3
jim miller
3
Most Commits
axel kohlmeyer
17,652
paul wessel
15,939
rwcox
13,288
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
jean-christophe fillion-robin
7,236
berk geveci
6,819
andy cedilnik
6,690
ben boeckel
6,469
brad king
6,426
paolo di tommaso
6,302
sebastien barre
5,806
kitware robot
5,424
eric brugger
5,274
will schroeder
5,242
bernd wiswedel
4,416
joaquim luis
4,298
steve pieper
3,945
david gobbi
3,901
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
rick reynolds
3,354
hess
3,284
andras lasso
3,103
mathieu malaterre
3,058
francois bertel
2,958
amy squillacote
2,823
mrneont
2,742
Direct Dependencies
actions:actions/checkout
11
actions:actions/upload-artifact
7
pypi:numpy
6
actions:actions/setup-python
6
pypi:sphinx
5
docker:ubuntu
5
pypi:setuptools
4
pypi:sphinx_rtd_theme
4
pypi:packaging
4
actions:actions/download-artifact
4
pypi:wheel
4
actions:actions/setup-java
3
pypi:scipy
3
pypi:requests
3
pypi:pyyaml
3
pypi:pandas
3
pypi:networkx
3
pypi:myst-parser
3
pypi:pygments
3
pypi:pytest
3
pypi:matplotlib
2
pypi:Sphinx
2
pypi:chardet
2
pypi:httpx
2
pypi:mpi4py
2
pypi:cython
2
pypi:pillow
2
pypi:pip
2
pypi:pyparsing
2
pypi:sphinx-copybutton
2
Repository Owners
Repository Hosts
Statistics
- Projects: -4
- Last updated: over 1 year ago