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Summary

An open API service for producing an overview of a list of open source projects.

Collections: Critical open source scientific software

https://github.com/biolab/orange3

šŸŠ :bar_chart: :bulb: Orange: Interactive data analysis

classification clustering data-mining data-science data-visualization decision-trees machine-learning numpy orange orange3 pandas plotting python random-forest regression scikit-learn scipy visual-programming visualization

Last synced: 05 Feb 2026

https://github.com/Slicer/Slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 05 Feb 2026

https://github.com/neuronsimulator/nrn

NEURON Simulator

high-performance-computing neuron neuroscience simulation

Last synced: 05 Feb 2026

https://github.com/nextflow-io/nextflow

A DSL for data-driven computational pipelines

aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine

Last synced: 05 Feb 2026

Keywords
visualization 3 simulation 3 python 3 bioinformatics 3 c-plus-plus 2 image-processing 2 hpc 2 genomics 2 machine-learning 2 scikit-learn 1 regression 1 scipy 1 visual-programming 1 random-forest 1 plotting 1 pandas 1 orange3 1 molecular dynamics 1 dna 1 gatk 1 genome 1 ngs 1 science 1 sequencing 1 spark 1 anatomical-mri 1 dwi 1 climate 1 climate-model 1 ncar 1
Languages
C++ 4 C 4 Java 3 Python 3 Groovy 1 Perl 1 Shell 1
Most Issues and Pull Requests
bentsherman bentsherman 463 jcfr jcfr 422 biagas biagas 398 akohlmey akohlmey 393 jcgoran jcgoran 377 paulwessel paulwessel 351 alkino alkino 347 dependabot[bot] dependabot[bot] 339 justinprivitera justinprivitera 318 pditommaso pditommaso 279 mcovarr mcovarr 248 lassoan lassoan 247 afni-rickr afni-rickr 239 nrnhines nrnhines 234 1uc 1uc 233 markcmiller86 markcmiller86 213 joa-quim joa-quim 200 cyrush cyrush 194 seisman seisman 193 rbdavis rbdavis 181 janezd janezd 168 gbggrant gbggrant 168 brugger1 brugger1 162 jorgee jorgee 150 slicer-app[bot] slicer-app[bot] 148 ramcdougal ramcdougal 137 adamrtalbot adamrtalbot 126 slicerbot slicerbot 123 fischer-ncar fischer-ncar 121 jamesobutler jamesobutler 113
Committers
dependabot[bot] 6 unknown 4 hua yang 3 shreeraj jadhav 3 matthew bowman 3 julien finet 3 dave partyka 3 lucas gandel 3 cory quammen 3 julien schueller 3 casey goodlett 3 johan andruejol 3 pablo hernandez-cerdan 3 andrew bauer 3 brad davis 3 kent williams 3 bernhard m. wiedemann 3 tim thirion 3 zach mullen 3 zack galbreath 3 tom fogal 3 karthik krishnan 3 matthew woehlke 3 julien nabet 3 max smolens 3 david allemang 3 jon haitz legarreta gorroƱo 3 bill lorensen 3 hans johnson 3 andy cedilnik 3
Most Commits
paul wessel 15,939 axel kohlmeyer 15,251 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 robert cox 8,008 jean-christophe fillion-robin 7,174 andy cedilnik 6,690 berk geveci 6,651 brad king 6,426 ben boeckel 6,273 paolo di tommaso 5,976 sebastien barre 5,806 eric brugger 5,253 will schroeder 5,225 rick reynolds 5,181 kitware robot 4,783 bernd wiswedel 4,390 joaquim luis 4,175 steve pieper 3,917 david gobbi 3,870 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 hess 3,284 mathieu malaterre 3,058 francois bertel 2,958 andras lasso 2,871 amy squillacote 2,823 remko scharroo 2,679
Direct Dependencies
actions:actions/checkout 8 actions:actions/upload-artifact 6 pypi:sphinx 5 docker:ubuntu 4 actions:actions/setup-python 4 pypi:numpy 3 pypi:setuptools 3 pypi:wheel 3 actions:actions/setup-java 3 pypi:sphinx_rtd_theme 3 pypi:mpi4py 2 pypi:pytest 2 pypi:sphinx-notfound-page 2 pypi:Sphinx 2 pypi:packaging 2 actions:shogo82148/actions-upload-release-asset 2 pypi:Pygments 2 pypi:build 2 maven:commons-io:commons-io 2 pypi:myst-parser 2 actions:actions/download-artifact 2 pypi:pip 2 actions:styfle/cancel-workflow-action 2 maven:org.broadinstitute:gatk-fermilite-jni 1 maven:org.broadinstitute:gatk-bwamem-jni 1 maven:org.broadinstitute:http-nio 1 maven:org.xerial:sqlite-jdbc 1 maven:net.grey-panther:natural-comparator 1 maven:com.intel.gkl:gkl 1 maven:com.esotericsoftware:kryo 1
Repository Owners
vtk vtk 1 ESCOMP ESCOMP 1 knime knime 1 GenericMappingTools GenericMappingTools 1 qiime2 qiime2 1 paraview paraview 1 cytoscape cytoscape 1 imagej imagej 1 biolab biolab 1 gromacs gromacs 1 broadinstitute broadinstitute 1 afni afni 1 trinityrnaseq trinityrnaseq 1 visit-dav visit-dav 1 Slicer Slicer 1 neuronsimulator neuronsimulator 1 lammps lammps 1 BenLangmead BenLangmead 1 samtools samtools 1 nextflow-io nextflow-io 1
Repository Hosts
GitHub 17 gitlab.kitware.com 2 gitlab.com 1
Statistics

  • Projects: -4
  • Last updated: 10 months ago