python 3 simulation 3 visualization 3 bioinformatics 3 genomics 2 c-plus-plus 2 image-processing 2 hpc 2 machine-learning 2 clustering 1 classification 1 read-aligners 1 statistics 1 statistical-inference 1 quality-control 1 mri 1 fmri-data-analysis 1 data-mining 1 data-science 1 data-visualization 1 decision-trees 1 numpy 1 orange 1 orange3 1 pandas 1 plotting 1 random-forest 1 regression 1 scikit-learn 1 high-performance-computing 1

C 4 C++ 4 Java 3 Python 3 Groovy 1 Perl 1 Shell 1

bentsherman 576 akohlmey 519 biagas 456 jcfr 423 dependabot[bot] 388 jcgoran 380 justinprivitera 379 pditommaso 364 paulwessel 351 alkino 348 lassoan 293 mcovarr 286 nrnhines 279 afni-rickr 260 markcmiller86 240 1uc 233 seisman 223 joa-quim 220 cyrush 217 jorgee 196 janezd 195 rbdavis 181 gbggrant 171 brugger1 171 slicer-app[bot] 160 esteban82 159 ramcdougal 157 fischer-ncar 156 adamrtalbot 138 ewels 128

dependabot[bot] 7 unknown 4 brad davis 3 sebastien barre 3 julien nabet 3 christoph junghans 3 zach mullen 3 shreeraj jadhav 3 andy cedilnik 3 dave partyka 3 kenneth moreland 3 bernhard m. wiedemann 3 sankhesh jhaveri 3 hank childs 3 luis ibanez 3 matthew bowman 3 pablo hernandez-cerdan 3 matthew woehlke 3 casey goodlett 3 burlen loring 3 stephen aylward 3 matt mccormick 3 johan andruejol 3 tim gates 3 max smolens 3 julien schueller 3 zack galbreath 3 yumin yuan 3 tim thirion 3 tom fogal 3

axel kohlmeyer 17,652 paul wessel 15,939 utkarsh ayachit 11,814 sjplimp 9,849 ken martin 9,754 robert cox 8,012 jean-christophe fillion-robin 7,236 berk geveci 6,819 andy cedilnik 6,690 ben boeckel 6,466 brad king 6,426 paolo di tommaso 6,222 sebastien barre 5,806 kitware robot 5,407 rick reynolds 5,286 eric brugger 5,271 will schroeder 5,242 bernd wiswedel 4,416 joaquim luis 4,285 steve pieper 3,945 david gobbi 3,901 bill lorensen 3,620 charles law 3,602 thorsten meinl 3,591 hess 3,284 andras lasso 3,075 mathieu malaterre 3,058 francois bertel 2,958 amy squillacote 2,823 janezd 2,690

actions:actions/checkout 11 actions:actions/upload-artifact 7 actions:actions/setup-python 6 docker:ubuntu 5 pypi:sphinx 5 actions:actions/download-artifact 4 pypi:sphinx_rtd_theme 4 pypi:numpy 4 pypi:pytest 3 pypi:packaging 3 pypi:setuptools 3 pypi:wheel 3 actions:actions/setup-java 3 pypi:myst-parser 3 pypi:pyyaml 3 pypi:pygments 3 pypi:pandas 3 pypi:networkx 3 pypi:sphinx-copybutton 2 actions:codespell-project/actions-codespell 2 pypi:platformdirs 2 actions:pypa/gh-action-pypi-publish 2 pypi:sphinx-notfound-page 2 pypi:lxml 2 pypi:python-dateutil 2 pypi:psutil 2 actions:docker/build-push-action 2 actions:docker/login-action 2 maven:commons-io:commons-io 2 pypi:docutils 2

neuronsimulator 1 Slicer 1 vtk 1 afni 1 BenLangmead 1 cytoscape 1 biolab 1 trinityrnaseq 1 knime 1 rachis-org 1 broadinstitute 1 lammps 1 ESCOMP 1 paraview 1 GenericMappingTools 1 visit-dav 1 samtools 1 gromacs 1 imagej 1 nextflow-io 1

GitHub 17 gitlab.kitware.com 2 gitlab.com 1