Collections: Critical open source scientific software
https://github.com/broadinstitute/gatk
Official code repository for GATK versions 4 and up
bioinformatics dna gatk genome genomics ngs science sequencing spark
Last synced: 09 Nov 2026
Keywords
bioinformatics
3
python
3
visualization
3
simulation
3
hpc
2
genomics
2
image-processing
2
machine-learning
2
c-plus-plus
2
workflow
1
tool-blending
1
open-source
1
climate
1
climate-model
1
integration
1
ncar
1
high-performance-computing
1
neuron
1
neuroscience
1
dna
1
gatk
1
genome
1
ngs
1
science
1
sequencing
1
spark
1
kokkos
1
lammps
1
anatomical-mri
1
dwi
1
Most Issues and Pull Requests
Committers
dependabot[bot]
7
unknown
4
brad davis
3
karthik krishnan
3
stephen aylward
3
tim gates
3
matthew woehlke
3
david allemang
3
jean-christophe fillion-robin
3
burlen loring
3
christoph junghans
3
kenneth moreland
3
sebastien barre
3
mathieu malaterre
3
tom fogal
3
zach mullen
3
tim thirion
3
pablo hernandez-cerdan
3
shelly belsky
3
hank childs
3
sankhesh jhaveri
3
hans johnson
3
matthew bowman
3
alexy pellegrini
3
jim miller
3
casey goodlett
3
bill lorensen
3
johan andruejol
3
david stoup
3
max smolens
3
Most Commits
axel kohlmeyer
17,652
paul wessel
15,939
rwcox
13,288
utkarsh ayachit
11,814
sjplimp
9,849
ken martin
9,754
jean-christophe fillion-robin
7,236
berk geveci
6,820
andy cedilnik
6,690
ben boeckel
6,469
brad king
6,426
paolo di tommaso
6,304
sebastien barre
5,806
kitware robot
5,428
eric brugger
5,275
will schroeder
5,242
bernd wiswedel
4,416
joaquim luis
4,298
steve pieper
3,945
david gobbi
3,901
bill lorensen
3,620
charles law
3,602
thorsten meinl
3,591
rick reynolds
3,356
hess
3,284
andras lasso
3,107
mathieu malaterre
3,058
francois bertel
2,958
amy squillacote
2,823
mrneont
2,751
Direct Dependencies
actions:actions/checkout
11
actions:actions/upload-artifact
7
pypi:numpy
6
actions:actions/setup-python
6
docker:ubuntu
5
pypi:sphinx
5
actions:actions/download-artifact
4
pypi:wheel
4
pypi:setuptools
4
pypi:packaging
4
pypi:sphinx_rtd_theme
4
pypi:requests
3
pypi:pygments
3
actions:actions/setup-java
3
pypi:myst-parser
3
pypi:networkx
3
pypi:pyyaml
3
pypi:pytest
3
pypi:pandas
3
pypi:scipy
3
pypi:pip
2
maven:commons-io:commons-io
2
pypi:six
2
pypi:sphinx-notfound-page
2
pypi:charset-normalizer
2
pypi:Sphinx
2
pypi:sphinx-design
2
pypi:sphinx-copybutton
2
pypi:lxml
2
pypi:pillow
2
Repository Owners
Repository Hosts
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- Projects: -4
- Last updated: over 1 year ago