JOSS collection | Ecosyste.ms: Summary

https://github.com/vincentarelbundock/countrycode

R package: Convert country names and country codes. Assigns region descriptors.

Last synced: 12 Aug 2026

https://github.com/marshallward/f90nml

A Python module and command line tool for working with Fortran namelists

fortran namelist parser python

Last synced: 13 Aug 2026

https://github.com/earthlab/earthpy

A package built to support working with spatial data using open source python

education python raster spatial-data vector

Last synced: 13 Aug 2026

https://github.com/qiskit-community/qiskit-experiments

Qiskit Experiments

qiskit

Last synced: 13 Aug 2026

https://github.com/CliMA/Oceananigans.jl

🌊 Julia software for fast, friendly, flexible, ocean-flavored fluid dynamics on CPUs and GPUs

climate climate-change data-assimilation fluid-dynamics gpu julia machine-learning ocean

Last synced: 13 Aug 2026

https://github.com/bethgelab/foolbox

A Python toolbox to create adversarial examples that fool neural networks in PyTorch, TensorFlow, and JAX

adversarial-attacks adversarial-examples jax keras machine-learning python pytorch tensorflow

Last synced: 13 Aug 2026

https://github.com/mlr-org/mlr3

mlr3: Machine Learning in R - next generation

classification data-science machine-learning mlr3 r r-package regression

Last synced: 13 Aug 2026

https://github.com/telegraphic/hickle

a HDF5-based python pickle replacement

Last synced: 13 Aug 2026

https://github.com/spectralDNS/shenfun

High performance computational platform in Python for the spectral Galerkin method

chebyshev curvilinear-coordinates cylindrical-coordinates fenics fourier galerkin hermite hpc laguerre legendre mobius polar-coordinates python spectral spectral-methods spherical-coordinates turbulence ultraspherical

Last synced: 13 Aug 2026

https://github.com/IAMconsortium/pyam

Analysis & visualization of energy & climate scenarios

analysis energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization

Last synced: 13 Aug 2026

https://github.com/fury-gl/fury

FURY - Free Unified Rendering in pYthon.

3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation

Last synced: 13 Aug 2026

https://github.com/JuliaInterop/JuliaCall

Embed Julia in R

julia r

Last synced: 13 Aug 2026

https://github.com/opengeos/segment-geospatial

A Python package for segmenting geospatial data with the Segment Anything Model (SAM)

artificial-intelligence deep-learning geopython geospatial machine-learning segment-anything segmentation

Last synced: 13 Aug 2026

https://github.com/Materials-Consortia/optimade-python-tools

Tools for implementing and consuming OPTIMADE APIs in Python

openapi optimade optimade-api optimade-python optimade-specification python

Last synced: 13 Aug 2026

https://github.com/ropensci/visdat

Preliminary Exploratory Visualisation of Data

exploratory-data-analysis missingness peer-reviewed r r-package ropensci rstats visualisation

Last synced: 13 Aug 2026

https://github.com/21cmFAST/21cmFAST

Official repository for 21cmFAST: a code for generating fast simulations of the cosmological 21cm signal

Last synced: 13 Aug 2026

https://github.com/votca/votca

The source of the votca-csg and xtp packages

charge-transport coarse-grained-molecular-dynamics coarse-graining excited-states gromacs gw-bse molecular-dynamics multiscale-simulation votca

Last synced: 13 Aug 2026

https://github.com/ropensci/osmdata

R package for downloading OpenStreetMap data

cpp openstreetmap osm osm-data overpass-api peer-reviewed r r-package rstats

Last synced: 13 Aug 2026

https://github.com/linuxscout/pyarabic

pyarabic

arabic-language nlp-library text-processing

Last synced: 13 Aug 2026

https://github.com/vivekjoshy/openskill.py

Multiplayer Rating System. No Friction.

elo openskill openskill-py pypy python ranking ranking-system rating rating-system

Last synced: 12 Aug 2026

https://github.com/r-spatial/rgee

Google Earth Engine for R

earth-engine earthengine google-earth-engine googleearthengine r spatial-analysis spatial-data

Last synced: 13 Aug 2026

https://github.com/DLR-RM/BlenderProc

A procedural Blender pipeline for photorealistic training image generation

3d-engines 3d-front-dataset 3d-graphics 3d-reconstruction blender blender-installation blender-pipeline camera-positions camera-sampling computer-graphics depth-images pose-estimation python rendering segmentation suncg-scene synthetic synthetic-data

Last synced: 13 Aug 2026

https://github.com/arviz-devs/preliz

Exploring and eliciting probability distributions

bayesian-data-analysis bayesian-statistics prior-distribution prior-elicitation probability-distribution statistics

Last synced: 13 Aug 2026

https://github.com/maximtrp/scikit-posthocs

Multiple Pairwise Comparisons (Post Hoc) Tests in Python

posthoc-comparisons posthoc-tests python scikit statistical-analysis statistics stats

Last synced: 13 Aug 2026

https://github.com/easystats/correlation

:link: Methods for Correlation Analysis

bayesian bayesian-correlations biserial cor correlation correlation-analysis correlations easystats gamma gaussian-graphical-models hacktoberfest matrix multilevel-correlations outliers partial partial-correlations r regression robust spearman

Last synced: 13 Aug 2026

https://github.com/mdbloice/Augmentor

Image augmentation library in Python for machine learning.

augmentation deep-learning machine-learning neural-networks

Last synced: 13 Aug 2026

https://github.com/mmhs013/pyMannKendall

A python package for non parametric Mann Kendall family of trend tests.

mann-kendall-tests mk-test modified-mann-kendall-test python seasonal-mann-kendall trend-analysis

Last synced: 13 Aug 2026

https://github.com/zwicker-group/py-pde

Python package for solving partial differential equations using finite differences.

dynamical-systems finite-difference-method partial-differential-equations pdes python scientific-computing

Last synced: 13 Aug 2026

https://github.com/dankelley/oce

R package for oceanographic processing

oceanography r

Last synced: 13 Aug 2026

https://github.com/fatiando/verde

Processing and gridding spatial data, machine-learning style

earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack

Last synced: 13 Aug 2026

https://github.com/biogo/biogo

biogo is a bioinformatics library for Go

Last synced: 13 Aug 2026

https://github.com/ropensci/qualtRics

Download ⬇️ Qualtrics survey data directly into R!

api qualtrics qualtrics-api r r-package rstats survey survey-data

Last synced: 13 Aug 2026

https://github.com/greta-dev/greta

simple and scalable statistical modelling in R

Last synced: 13 Aug 2026

https://github.com/riatelab/cartography

Thematic Cartography for R

cartography map r-package thematic-maps

Last synced: 13 Aug 2026

https://github.com/adrn/gala

Galactic and gravitational dynamics in Python

astronomy astrophysics astropy-affiliated dynamics physics python

Last synced: 13 Aug 2026

https://github.com/icesat2py/icepyx

Python tools for obtaining and working with ICESat-2 data

closember community-driven hacktoberfest icesat-2 python3

Last synced: 13 Aug 2026

https://github.com/pyswmm/pyswmm

Python Wrappers for SWMM

hydraulic-modeling hydrology-stormwater-analysis python stormwater swmm swmm5

Last synced: 13 Aug 2026

https://github.com/jeetsukumaran/DendroPy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Last synced: 13 Aug 2026

https://github.com/pysal/splot

Lightweight plotting for geospatial analysis in PySAL

Last synced: 13 Aug 2026

https://github.com/easystats/effectsize

:dragon: Compute and work with indices of effect size and standardized parameters

anova cohens-d compute conversion correlation effect-size effectsize hacktoberfest hedges-g interpretation r standardization standardized statistics

Last synced: 13 Aug 2026

https://github.com/strengejacke/ggeffects

Estimated Marginal Means and Marginal Effects from Regression Models for ggplot2

estimated-marginal-means hacktoberfest marginal-effects prediction

Last synced: 13 Aug 2026

https://github.com/scikit-learn-contrib/forest-confidence-interval

Confidence intervals for scikit-learn forest algorithms

Last synced: 13 Aug 2026

https://github.com/jtauber/pyuca

a Python implementation of the Unicode Collation Algorithm

unicode unicode-collation-algorithm

Last synced: 13 Aug 2026

https://github.com/opencobra/optlang

optlang - sympy based mathematical programming language

Last synced: 13 Aug 2026

https://github.com/scikit-tda/ripser.py

A Lean Persistent Homology Library for Python

data-science homology persistent-homology ripser tda topological-data-analysis topology

Last synced: 13 Aug 2026

https://github.com/jboynyc/textnets

Text analysis with networks.

computational-social-science network-analysis nlp sociology text-analysis text-as-data visualization

Last synced: 13 Aug 2026

https://github.com/abntex/limarka

Escreva seu trabalho de conclusão de curso com as normas da ABNT em Markdown

abnt abntex escrita latex limarka markdown texto

Last synced: 13 Aug 2026

https://github.com/infer-actively/pymdp

A Python implementation of active inference for Markov Decision Processes

Last synced: 13 Aug 2026

https://github.com/JuliaAI/MLJ.jl

A Julia machine learning framework

classification clustering data-science ensemble-learning julia machine-learning pipeline pipelines predictive-modeling regression stacking statistics tuning tuning-parameters

Last synced: 13 Aug 2026

https://github.com/damcb/tyssue

An epithelium simulation library

biological-simulations geometry notebook pandas vertex

Last synced: 12 Aug 2026

https://github.com/robbievanleeuwen/section-properties

Analysis of an arbitrary cross-section in python using the finite element method.

computational-mechanics cross-section finite-element-analysis finite-element-method python stress-analysis structural-engineering

Last synced: 12 Aug 2026

https://github.com/annoviko/pyclustering

pyclustering is a Python, C++ data mining library.

algorithms c-plus-plus clustering data-mining data-science machine-learning neural-networks oscillatory-networks python python3

Last synced: 13 Aug 2026

https://github.com/JuliaDiff/TaylorSeries.jl

Taylor polynomial expansions in one and several independent variables.

automatic-differentiation julia polynomials taylor-expansions

Last synced: 13 Aug 2026

https://github.com/easystats/datawizard

Magic potions to clean and transform your data 🧙

data dplyr hacktoberfest janitor manipulation r-package reshape rstats tidyr wrangling

Last synced: 13 Aug 2026

https://github.com/strengejacke/sjmisc

Data transformation and utility functions for R

data-transformation data-wrangling labelled-data r recoding

Last synced: 13 Aug 2026

https://github.com/sepandhaghighi/pycm

Multi-class confusion matrix library in Python

accuracy ai artificial-intelligence classification confusion-matrix data data-analysis data-mining data-science deep-learning deeplearning evaluation machine-learning mathematics matrix ml multiclass-classification neural-network statistical-analysis statistics

Last synced: 13 Aug 2026

https://github.com/mlr-org/batchtools

Tools for computation on batch systems

batchexperiments batchjobs cran docker-swarm high-performance-computing hpc hpc-clusters lsf openlava parallel-computing r reproducibility sge slurm torque

Last synced: 13 Aug 2026

https://github.com/sunpy/ndcube

A base package for multi-dimensional contiguous and non-contiguous coordinate-aware arrays.

astropy nddata numfocus sunpy wcs

Last synced: 13 Aug 2026

https://github.com/canimus/cuallee

Possibly the fastest DataFrame-agnostic quality check library in town.

bigdata data-quality data-quality-checks dataquality pandas performance-metrics pydeequ pyspark python3 snowpark unit-testing

Last synced: 13 Aug 2026

https://github.com/caleb531/automata

A Python library for simulating finite automata, pushdown automata, and Turing machines

automata automaton finite-state-machine fsm pushdown-automata python turing-machine turing-machines

Last synced: 13 Aug 2026

https://github.com/relf/egobox

Efficient global optimization toolbox in Rust: bayesian optimization, mixture of gaussian processes, sampling methods

gaussian-processes global-optimization latin-hypercube-sampling mixture-of-experts surrogate-models

Last synced: 13 Aug 2026

https://github.com/gregreen/dustmaps

A uniform interface for a number of 2D and 3D maps of interstellar dust reddening/extinction.

Last synced: 13 Aug 2026

https://github.com/psychrometrics/psychrolib

📚 Library of psychrometric functions to calculate 🌡️ thermodynamic properties of air for Python, C, C#, Fortran, R, JavaScript and VBA/Excel

ashrae c csharp dew-point-temperature engineering excel fortran humidity hvac javascript meteorology moist-air net pressure psychrometrics python relative-humidity temperature thermodynamic-properties vba

Last synced: 13 Aug 2026

https://github.com/ropensci/tokenizers

Fast, Consistent Tokenization of Natural Language Text

nlp peer-reviewed r r-package rstats text-mining tokenizer

Last synced: 13 Aug 2026

https://github.com/SpeedyWeather/SpeedyWeather.jl

Play atmospheric modelling like it's LEGO.

Last synced: 12 Aug 2026

https://github.com/SciML/DataInterpolations.jl

A library of data interpolation and smoothing functions

Last synced: 13 Aug 2026

https://github.com/PennyLaneAI/catalyst

A JIT compiler for hybrid quantum programs in PennyLane

autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing

Last synced: 13 Aug 2026

https://github.com/titipata/pubmed_parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

article doi medline-xml nlp parse parser pmid pubmed-central pubmed-parser python xml

Last synced: 13 Aug 2026

https://github.com/euroargodev/argopy

A python library for Argo data beginners and experts

argo argo-data argo-floats oceanography python

Last synced: 13 Aug 2026

https://github.com/JuliaDynamics/DrWatson.jl

The perfect sidekick to your scientific inquiries

hacktoberfest project-assistant project-management science science-research setup-tool simulations

Last synced: 13 Aug 2026

https://github.com/jepegit/cellpy

extract and tweak data from electrochemical tests of cells

battery chemistry data-analysis electrochemistry opensource physics

Last synced: 12 Aug 2026

https://github.com/ropensci/codemetar

an R package for generating and working with codemeta

codemeta json-ld metadata peer-reviewed r r-package rstats

Last synced: 13 Aug 2026

https://github.com/NiaOrg/NiaPy

Python microframework for building nature-inspired algorithms. Official docs: https://niapy.org

hacktoberfest microframework nature-inspired-algorithms optimization-algorithms python swarm-intelligence

Last synced: 13 Aug 2026

https://github.com/sxs-collaboration/gwsurrogate

An easy to use interface to gravitational wave surrogate models

gravitational-waveforms python surrogate-models

Last synced: 12 Aug 2026

https://github.com/AnyBody-Research-Group/AnyPyTools

Python tools and utilities for working with the AnyBody Modelling System

anybody python

Last synced: 13 Aug 2026

https://github.com/corybrunson/ggalluvial

ggplot2 extension for alluvial plots

alluvial-diagrams alluvial-plots categorical-data-visualization ggplot2 r repeated-measures-data

Last synced: 13 Aug 2026

https://github.com/probml/dynamax

A Python package for probabilistic state space modeling with JAX

hidden-markov-models jax kalman-filter python state-space-models

Last synced: 12 Aug 2026

https://github.com/csu-hmc/opty

A library for using direct collocation in the optimization of dynamic systems.

collocation optimal optimal-control optimization parameter-estimation python

Last synced: 13 Aug 2026

https://github.com/JuliaGeo/NCDatasets.jl

Load and create NetCDF files in Julia

climate-and-forecast-conventions climatology earth-observation julia meteorology netcdf oceanography opendap

Last synced: 12 Aug 2026

https://github.com/drvinceknight/Nashpy

A python library for 2 player games.

algorithm computer-science equilibria game mathematics nash python

Last synced: 13 Aug 2026

https://github.com/schochastics/graphlayouts

new layout algorithms for network visualizations in R

ggraph graph-algorithms network-analysis network-visualization r

Last synced: 13 Aug 2026

https://github.com/sep-developers/sep

Python and C library for source extraction and photometry

Last synced: 13 Aug 2026

https://github.com/brainglobe/brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

atlases brain microscopy neuroscience python registration visualisation

Last synced: 13 Aug 2026

https://github.com/joshday/OnlineStats.jl

⚡ Single-pass algorithms for statistics

big-data julia julia-language julialang online-algorithms onlinestats statistics stochastic-approximation streaming-data

Last synced: 13 Aug 2026

https://github.com/cokelaer/spectrum

Spectral Analysis in Python

arma fourier pburg periodogram psd python spectral

Last synced: 13 Aug 2026

https://github.com/bjodah/chempy

⚗ A package useful for chemistry written in Python

chemical-formulas chemical-kinetics chemical-reaction-model chemistry physical-chemistry python speciation

Last synced: 13 Aug 2026

https://github.com/munich-quantum-toolkit/core

MQT Core - The Backbone of the Munich Quantum Toolkit

mqt quantum-computing quantum-intermediate-representation tum

Last synced: 12 Aug 2026

https://github.com/giuseppec/iml

iml: interpretable machine learning R package

Last synced: 13 Aug 2026

https://github.com/RadioAstronomySoftwareGroup/pyuvdata

A pythonic interface for radio astronomy interferometry data (uvfits, measurement sets, uvh5, others)

astronomy interferometry python radio-astronomy

Last synced: 13 Aug 2026

https://github.com/1313e/CMasher

Scientific colormaps for making accessible, informative and 'cmashing' plots

colormaps data-visualization matplotlib plotting python utility-functions

Last synced: 13 Aug 2026

https://github.com/pnnl/HyperNetX

Python package for hypergraph analysis and visualization.

hypergraph hypergraphs knowledge-graph property-hypergraphs python s-linegraph simplicial-complexes simplicial-homology

Last synced: 12 Aug 2026

https://github.com/konradhoeffner/hdt

Library for the Header Dictionary Triples (HDT) compression file format for RDF data.

hdt rdf rust

Last synced: 13 Aug 2026

https://github.com/ropensci/RefManageR

R package RefManageR

peer-reviewed r r-package rstats

Last synced: 13 Aug 2026

https://github.com/oemof/tespy

Thermal Engineering Systems in Python (TESPy). This package provides a powerful simulation toolkit for thermodynamic modeling of thermal engineering plants such as power plants, heat pumps or refrigeration machines.

cooling energy-system exergy heating powerplant process-engineering python refrigeration simulation thermodynamic-cycles thermodynamics