JOSS: https://github.com/jeetsukumaran/DendroPy
Score: 20.671778541636634
Last synced: about 4 hours ago
JSON representation
Repository metadata:
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
- Host: GitHub
- URL: https://github.com/jeetsukumaran/DendroPy
- Owner: jeetsukumaran
- License: bsd-3-clause
- Created: 2009-10-06T21:50:18.000Z (almost 17 years ago)
- Default Branch: main
- Last Pushed: 2026-09-11T21:16:46.000Z (18 days ago)
- Last Synced: 2026-09-13T00:49:44.292Z (17 days ago)
- Language: Python
- Homepage: https://pypi.org/project/DendroPy/.
- Size: 59.3 MB
- Stars: 236
- Watchers: 10
- Forks: 62
- Open Issues: 21
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGES.rst
- License: LICENSE.rst
- Code of conduct: CODE_OF_CONDUCT.rst
- Citation: CITATION.cff
- Authors: AUTHORS.rst
Owner metadata:
- Name: Jeet Sukumaran
- Login: jeetsukumaran
- Email:
- Kind: user
- Description:
- Website: http://sukumaranlab.org
- Location: San Diego,CA
- Twitter:
- Company: San Diego State University
- Icon url: https://avatars.githubusercontent.com/u/26183?u=db77db89ad7b3241d45006d7c19f8861bfc280db&v=4
- Repositories: 165
- Last Synced at: 2026-09-25T21:12:29.815Z
- Profile URL: https://github.com/jeetsukumaran
GitHub Events
Total
- Create event: 12
- Delete event: 5
- Fork event: 1
- Issue comment event: 26
- Issues event: 7
- Pull request event: 21
- Pull request review comment event: 3
- Pull request review event: 5
- Push event: 48
- Watch event: 20
- Total: 148
Last Year
- Create event: 3
- Delete event: 2
- Issue comment event: 6
- Issues event: 2
- Pull request event: 10
- Pull request review comment event: 3
- Pull request review event: 5
- Push event: 4
- Watch event: 8
- Total: 43
Committers metadata
Last synced: 1 day ago
Total Commits: 4,692
Total Committers: 41
Avg Commits per committer: 114.439
Development Distribution Score (DDS): 0.156
Commits in past year: 23
Committers in past year: 7
Avg Commits per committer in past year: 3.286
Development Distribution Score (DDS) in past year: 0.391
| Name | Commits | |
|---|---|---|
| Jeet Sukumaran | j****n@g****m | 3961 |
| Matthew Andres Moreno | m****g@g****m | 326 |
| Mark T. Holder | m****r@g****m | 283 |
| Connor Yang | c****5@g****m | 61 |
| Andrew Guy | a****y@b****u | 6 |
| dependabot[bot] | 4****] | 5 |
| David Pattinson | d****i@p****m | 5 |
| Nephrain | 9****n | 4 |
| Vin Vomero | 3****o | 3 |
| April Wright | w****m@g****m | 3 |
| allista | a****a@g****m | 2 |
| terrycojones | t****y@j****s | 2 |
| Steve Bond | b****y@g****m | 2 |
| Mike German | m****e@s****m | 2 |
| mholder | m****r@k****u | 1 |
| mgymrek | m****k@m****u | 1 |
| eeshsaxena | c****2@g****m | 1 |
| a g | a****i@b****) | 1 |
| Vachaspati | v****2@t****u | 1 |
| Pranjal Vachaspati | p****l@p****l | 1 |
| Mark Holder | m****r@j****) | 1 |
| Derrick Zwickl | z****l@D****l | 1 |
| wosnat | o****g@g****m | 1 |
| petercombs | p****s@s****u | 1 |
| kyungtaekLIM | s****a@g****m | 1 |
| darrnz | e****z@u****h | 1 |
| actapia | a****a@u****u | 1 |
| Sam Nicholls | s****8@g****m | 1 |
| Russell Neches | g****t@v****g | 1 |
| Noah Amsel | e****5@g****m | 1 |
| and 11 more... | ||
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 91
Total pull requests: 113
Average time to close issues: about 2 years
Average time to close pull requests: 6 months
Total issue authors: 63
Total pull request authors: 27
Average comments per issue: 2.05
Average comments per pull request: 1.23
Merged pull request: 77
Bot issues: 1
Bot pull requests: 23
Past year issues: 4
Past year pull requests: 16
Past year average time to close issues: 5 months
Past year average time to close pull requests: 1 day
Past year issue authors: 3
Past year pull request authors: 7
Past year average comments per issue: 2.0
Past year average comments per pull request: 2.75
Past year merged pull request: 7
Past year bot issues: 0
Past year bot pull requests: 4
Top Issue Authors
- mmore500 (14)
- hyanwong (3)
- psathyrella (3)
- mtholder (3)
- thekswenson (2)
- niemasd (2)
- terrycojones (2)
- ericmjl (2)
- wrightaprilm (2)
- benjaminwilson (2)
- ryneches (2)
- nick-youngblut (2)
- idavydov (2)
- Mahim1997 (1)
- Kajori (1)
Top Pull Request Authors
- mmore500 (54)
- dependabot[bot] (23)
- vinvomero (4)
- terrycojones (4)
- steps-re (3)
- evoling (2)
- davipatti (2)
- ryneches (2)
- balhoff (1)
- Carreau (1)
- Kuanhao-Chao (1)
- crosenth (1)
- joaks1 (1)
- NoahAmsel (1)
- pranjalv123 (1)
Top Issue Labels
- enhancement (22)
- bug (8)
- question (3)
- infrastructure (2)
- dependencies (1)
Top Pull Request Labels
- dependencies (23)
- python (11)
Package metadata
- Total packages: 6
-
Total downloads:
- pypi: 89,517 last-month
- Total docker downloads: 475
- Total dependent packages: 33 (may contain duplicates)
- Total dependent repositories: 109 (may contain duplicates)
- Total versions: 39
- Total maintainers: 5
pypi.org: dendropy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
- Homepage: http://github.com/jeetsukumaran/DendroPy
- Documentation: https://jeetsukumaran.github.io/DendroPy/
- Licenses: BSD
- Latest release: 5.1.0 (published 18 days ago)
- Last Synced: 2026-09-28T18:38:56.487Z (1 day ago)
- Versions: 34
- Dependent Packages: 33
- Dependent Repositories: 109
- Downloads: 89,517 Last month
- Docker Downloads: 475
-
Rankings:
- Dependent packages count: 0.448%
- Dependent repos count: 1.421%
- Average: 1.746%
- Downloads: 3.369%
- Maintainers (3)
nixpkgs-24.11: python312Packages.dendropy
Python library for phylogenetic computing
- Homepage: https://jeetsukumaran.github.io/DendroPy/
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-24.11/pkgs/development/python-modules/dendropy/default.nix#L46
- Licenses: BSD-3-Clause
- Latest release: 5.0.2 (published 8 months ago)
- Last Synced: 2026-03-07T14:15:36.173Z (7 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (2)
debian-13: python-dendropy
- Homepage: https://jeetsukumaran.github.io/DendroPy
- Documentation: https://packages.debian.org/trixie/python-dendropy
- Licenses: bsd-3-clause
- Latest release: 4.6.1-2 (published 8 months ago)
- Last Synced: 2026-08-18T20:30:24.987Z (about 1 month ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
nixpkgs-24.11: python311Packages.dendropy
Python library for phylogenetic computing
- Homepage: https://jeetsukumaran.github.io/DendroPy/
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-24.11/pkgs/development/python-modules/dendropy/default.nix#L46
- Licenses: BSD-3-Clause
- Latest release: 5.0.2 (published 8 months ago)
- Last Synced: 2026-03-07T08:19:05.997Z (7 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Maintainers (2)
nixpkgs-unstable: python313Packages.dendropy
Python library for phylogenetic computing
- Homepage: https://jeetsukumaran.github.io/DendroPy/
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/development/python-modules/dendropy/default.nix#L45
- Licenses: BSD-3-Clause
- Latest release: 5.0.8 (published 8 months ago)
- Last Synced: 2026-07-24T20:52:24.346Z (2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (2)
nixpkgs-unstable: python314Packages.dendropy
Python library for phylogenetic computing
- Homepage: https://jeetsukumaran.github.io/DendroPy/
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/development/python-modules/dendropy/default.nix#L45
- Licenses: BSD-3-Clause
- Latest release: 5.0.8 (published 8 months ago)
- Last Synced: 2026-09-29T06:28:01.647Z (about 17 hours ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (2)
Dependencies
- setuptools *
- sphinx *
- sphinxcontrib-napoleon *
- attrs ==24.2.0
- importlib-metadata ==4.8.3
- iniconfig ==1.1.1
- packaging ==21.3
- pluggy ==1.0.0
- py ==1.11.0
- pyparsing ==3.1.4
- pytest ==7.0.1
- tomli ==1.2.3
- typing-extensions ==4.1.1
- zipp ==3.6.0
- attrs ==24.2.0
- importlib-metadata ==4.8.3
- iniconfig ==1.1.1
- packaging ==21.3
- pluggy ==1.0.0
- pytest ==7.0.1
- tomli ==1.2.3
- typing-extensions ==4.1.1
- zipp ==3.6.0
- pytest *
- alabaster ==0.7.13
- babel ==2.13.1
- certifi ==2024.7.4
- charset-normalizer ==3.3.1
- docutils ==0.20.1
- idna ==3.7
- imagesize ==1.4.1
- jinja2 ==3.1.4
- markupsafe ==2.1.3
- packaging ==23.2
- pockets ==0.9.1
- pygments ==2.16.1
- requests ==2.31.0
- six ==1.16.0
- snowballstemmer ==2.2.0
- sphinx ==7.2.6
- sphinxcontrib-applehelp ==1.0.7
- sphinxcontrib-devhelp ==1.0.5
- sphinxcontrib-htmlhelp ==2.0.4
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-napoleon ==0.7
- sphinxcontrib-qthelp ==1.0.6
- sphinxcontrib-serializinghtml ==1.1.9
- urllib3 ==2.2.2
- exceptiongroup ==1.3.0
- importlib-metadata ==6.7.0
- iniconfig ==2.0.0
- packaging ==24.0
- pluggy ==1.2.0
- pytest ==7.4.4
- tomli ==2.0.1
- typing-extensions ==4.7.1
- zipp ==3.15.0
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- actions/checkout master composite
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