JOSS: https://github.com/damcb/tyssue
biological-simulations geometry notebook pandas vertex
Score: 20.054174719104875
Last synced: 1 day ago
JSON representation
Repository metadata:
An epithelium simulation library
- Host: GitHub
- URL: https://github.com/damcb/tyssue
- Owner: DamCB
- License: gpl-3.0
- Created: 2015-03-19T16:27:24.000Z (over 11 years ago)
- Default Branch: main
- Last Pushed: 2026-02-04T14:33:24.000Z (5 months ago)
- Last Synced: 2026-06-03T13:04:13.692Z (19 days ago)
- Topics: biological-simulations, geometry, notebook, pandas, vertex
- Language: Python
- Homepage:
- Size: 56.2 MB
- Stars: 66
- Watchers: 8
- Forks: 22
- Open Issues: 18
-
Metadata Files:
- Readme: README.md
- Changelog: changelog.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Roadmap: ROADMAP.md
Owner metadata:
- Name: Data Analysis and Modelling in Computational Biology
- Login: DamCB
- Email: contact@morphogenie.fr
- Kind: organization
- Description: Morphogenie Logiciels is a free software edition company working on biology
- Website: http://morphogenie.fr
- Location: Marseille, France
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/7861101?v=4
- Repositories: 3
- Last Synced at: 2023-02-28T03:40:24.084Z
- Profile URL: https://github.com/DamCB
GitHub Events
Total
- Fork event: 5
- Issue comment event: 7
- Issues event: 3
- Pull request event: 9
- Push event: 1
- Watch event: 6
- Total: 31
Last Year
- Issue comment event: 2
- Pull request event: 2
- Push event: 1
- Watch event: 3
- Total: 8
Committers metadata
Last synced: 3 days ago
Total Commits: 844
Total Committers: 14
Avg Commits per committer: 60.286
Development Distribution Score (DDS): 0.238
Commits in past year: 2
Committers in past year: 1
Avg Commits per committer in past year: 2.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Guillaume Gay | g****e@d****m | 643 |
| Sophie THEIS | s****3@g****m | 119 |
| Guillaume Gay | g****e@m****g | 34 |
| Bertrand Caré | b****e@g****m | 19 |
| Hadrien Mary | h****y@g****m | 13 |
| Pablo Vicente Munuera | p****a@u****k | 4 |
| btbest | 6****t | 3 |
| George C | 5****u | 3 |
| sniffo | t****n@g****m | 1 |
| kc lee | e****7@g****m | 1 |
| felixquinton | f****n@u****r | 1 |
| Yo Yehudi | y****h@g****m | 1 |
| The Gitter Badger | b****r@g****m | 1 |
| Pierre de Buyl | p****l@p****e | 1 |
Issue and Pull Request metadata
Last synced: 8 months ago
Total issues: 71
Total pull requests: 67
Average time to close issues: 11 months
Average time to close pull requests: 22 days
Total issue authors: 12
Total pull request authors: 9
Average comments per issue: 3.49
Average comments per pull request: 1.63
Merged pull request: 53
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 8
Past year average time to close issues: N/A
Past year average time to close pull requests: 3 days
Past year issue authors: 1
Past year pull request authors: 4
Past year average comments per issue: 3.0
Past year average comments per pull request: 0.63
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- glyg (22)
- sniffo (18)
- sophietheis (13)
- Lepinja666 (6)
- btbest (4)
- kephale (2)
- jonathan-f (1)
- vlachina (1)
- gcourcou (1)
- EptmSIM (1)
- BenitoJG (1)
- Pablo1990 (1)
Top Pull Request Authors
- glyg (33)
- sophietheis (15)
- sniffo (7)
- btbest (3)
- gcourcou (3)
- Pablo1990 (2)
- yochannah (1)
- pdebuyl (1)
- PinkGenji (1)
Top Issue Labels
- bug (5)
- design (2)
- question (2)
- documentation (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- conda: 435,521 total
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 24
conda-forge.org: tyssue
tyssue provides data structures and algorithms to model epithelium in 2D and 3D for python 3.6+
- Homepage: https://github.com/DamCB/tyssue
- Licenses: GPL-3.0-or-later
- Latest release: 0.9.0 (published about 5 years ago)
- Last Synced: 2026-04-03T09:37:51.687Z (3 months ago)
- Versions: 24
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 435,521 Total
-
Rankings:
- Dependent repos count: 24.387%
- Average: 38.667%
- Forks count: 38.784%
- Stargazers count: 39.902%
- Dependent packages count: 51.594%
Dependencies
- ipykernel *
- ipyvolume *
- matplotlib *
- nbsphinx *
- numpy *
- pandas *
- quantities *
- scipy *
- sphinx >=1.4
- tables *
- ipyvolume *
- ipywidgets *
- jupyter *
- matplotlib *
- meshio *
- notebook *
- numpy *
- pandas >=0.24
- pytables *
- pythreejs *
- quantities *
- scipy *
- actions/checkout v3 composite
- conda-incubator/setup-miniconda v2 composite
- boost-cpp
- cgal
- cmake
- gmp
- ipython
- ipython_genutils
- ipyvolume
- ipywidgets
- jupyter
- matplotlib
- meshio
- mpfr
- notebook
- numpy
- pandas
- pip
- pybind11
- pytables
- python >=3.6
- pythreejs
- quantities
- scipy
- vispy
- xarray
- zarr