JOSS: https://github.com/brainglobe/brainglobe-atlasapi
atlases brain microscopy neuroscience python registration visualisation
Score: 19.602964615646307
Last synced: about 7 hours ago
JSON representation
Repository metadata:
A Python interface to access neuroanatomical atlases
- Host: GitHub
- URL: https://github.com/brainglobe/brainglobe-atlasapi
- Owner: brainglobe
- License: bsd-3-clause
- Created: 2020-04-30T11:10:37.000Z (over 6 years ago)
- Default Branch: main
- Last Pushed: 2026-08-07T16:33:34.000Z (7 days ago)
- Last Synced: 2026-08-09T11:53:44.096Z (5 days ago)
- Topics: atlases, brain, microscopy, neuroscience, python, registration, visualisation
- Language: Python
- Homepage: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
- Size: 1.61 MB
- Stars: 183
- Watchers: 13
- Forks: 68
- Open Issues: 286
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata:
- Name: BrainGlobe
- Login: brainglobe
- Email:
- Kind: organization
- Description: Open python tools for morphological analyses in systems neuroscience
- Website: https://brainglobe.info/
- Location: London/Munich
- Twitter: brain_globe
- Company:
- Icon url: https://avatars.githubusercontent.com/u/64580400?v=4
- Repositories: 28
- Last Synced at: 2023-03-04T04:44:38.657Z
- Profile URL: https://github.com/brainglobe
GitHub Events
Total
- Commit comment event: 1
- Create event: 111
- Delete event: 85
- Fork event: 21
- Issue comment event: 523
- Issues event: 184
- Member event: 2
- Pull request event: 223
- Pull request review comment event: 219
- Pull request review event: 301
- Push event: 415
- Release event: 8
- Watch event: 34
- Total: 2127
Last Year
- Create event: 31
- Delete event: 14
- Fork event: 4
- Issue comment event: 94
- Issues event: 68
- Pull request event: 36
- Pull request review comment event: 37
- Pull request review event: 36
- Push event: 133
- Watch event: 8
- Total: 461
Committers metadata
Last synced: 1 day ago
Total Commits: 474
Total Committers: 41
Avg Commits per committer: 11.561
Development Distribution Score (DDS): 0.829
Commits in past year: 85
Committers in past year: 16
Avg Commits per committer in past year: 5.313
Development Distribution Score (DDS) in past year: 0.765
| Name | Commits | |
|---|---|---|
| Luigi Petrucco | l****o@g****m | 81 |
| Adam Tyson | c****e@a****m | 74 |
| FedeClaudi | f****i@p****m | 57 |
| pre-commit-ci[bot] | 6****] | 46 |
| Harry Carey | h****5@g****m | 39 |
| Alessandro Felder | a****r | 34 |
| Igor Tatarnikov | 6****v | 31 |
| Stella | 3****s | 22 |
| viktorpm | 5****m | 11 |
| Will Graham | 3****1 | 9 |
| David Stansby | d****y@g****m | 7 |
| KAIXIANG SHUAI | 1****y | 6 |
| Jung Woo Kim | 1****5 | 6 |
| Nishanth B | 1****7 | 5 |
| carlocastoldi | 3****i | 4 |
| saimaabdus19 | 1****9 | 4 |
| Swapnaneel Patra | 5****5 | 3 |
| Varun Singh | v****1@g****m | 3 |
| Wolf | 2****f | 3 |
| saarah815 | 6****5 | 3 |
| Miguel Xochicale, PhD | m****e@u****k | 3 |
| Nicholas A. Del Grosso | d****k@g****m | 2 |
| Pavel Vychyk | 8****k | 2 |
| paddyroddy | p****y@g****m | 2 |
| sacha091 | s****9@g****m | 1 |
| pranav33317 | 1****7 | 1 |
| kirato yoshihara | 3****8 | 1 |
| Sean Martin | m****7@t****e | 1 |
| Samuel Diebolt | s****l@d****o | 1 |
| Rob Campbell | r****l | 1 |
| and 11 more... | ||
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 339
Total pull requests: 309
Average time to close issues: 5 months
Average time to close pull requests: 11 days
Total issue authors: 28
Total pull request authors: 37
Average comments per issue: 1.46
Average comments per pull request: 1.9
Merged pull request: 214
Bot issues: 0
Bot pull requests: 26
Past year issues: 112
Past year pull requests: 60
Past year average time to close issues: 29 days
Past year average time to close pull requests: 11 days
Past year issue authors: 11
Past year pull request authors: 20
Past year average comments per issue: 1.45
Past year average comments per pull request: 2.88
Past year merged pull request: 27
Past year bot issues: 0
Past year bot pull requests: 5
Top Issue Authors
- PolarBean (166)
- adamltyson (58)
- alessandrofelder (42)
- IgorTatarnikov (27)
- stellaprins (5)
- viktorpm (5)
- kjungwoo5 (4)
- mxochicale (4)
- FedeClaudi (3)
- Antorhythms (3)
- dbirman (2)
- mmeenakshibio2016-byte (2)
- thisisrick25 (2)
- carlocastoldi (2)
- p-vychik (1)
Top Pull Request Authors
- stellaprins (41)
- alessandrofelder (40)
- adamltyson (36)
- PolarBean (34)
- IgorTatarnikov (29)
- pre-commit-ci[bot] (26)
- kjungwoo5 (11)
- viktorpm (11)
- pranav33317 (8)
- Skxsmy (7)
- bahramani (7)
- mxochicale (7)
- Wolfffff (6)
- carlocastoldi (5)
- kira1228 (4)
Top Issue Labels
- enhancement (240)
- new-atlas (105)
- licensed (76)
- bug (59)
- atlasgen (41)
- new-atlas-high-priority (8)
- new-atlas-medium-priority (6)
- good first issue (3)
- V2 (2)
- help wanted (1)
Top Pull Request Labels
- enhancement (4)
- bug (1)
- documentation (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 16,953 last-month
- Total dependent packages: 8
- Total dependent repositories: 0
- Total versions: 25
- Total maintainers: 2
pypi.org: brainglobe-atlasapi
A lightweight python module to interact with and generate atlases for systems neuroscience.
- Homepage: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
- Documentation: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
- Licenses: BSD 3-Clause License Copyright (c) 2020, BrainGlobe All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. - Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- Latest release: 3.0.1 (published 4 days ago)
- Last Synced: 2026-08-13T02:12:28.348Z (1 day ago)
- Versions: 25
- Dependent Packages: 8
- Dependent Repositories: 0
- Downloads: 16,953 Last month
-
Rankings:
- Dependent packages count: 9.811%
- Average: 37.272%
- Dependent repos count: 64.733%
- Maintainers (2)
Dependencies
- actions/checkout v2 composite
- actions/setup-python v1 composite
- neuroinformatics-unit/actions/lint v1 composite
- neuroinformatics-unit/actions/test v1 composite
- brainglobe-space >= 1.0.0
- click *
- dracopy *
- fsspec *
- meshio *
- ngff-zarr <0.37.0
- numpy *
- pandas *
- pyarrow *
- requests *
- rich >= 9.0.0
- s3fs >= 2026
- tifffile >=2018.11.6
- tqdm >= 4.46.1
- treelib *