JOSS: https://github.com/spacetx/starfish
human-cell-atlas imaging python transcriptomics
Score: 16.009317301153974
Last synced: about 6 hours ago
JSON representation
Repository metadata:
starfish: unified pipelines for image-based transcriptomics
- Host: GitHub
- URL: https://github.com/spacetx/starfish
- Owner: spacetx
- License: mit
- Created: 2017-05-26T18:45:11.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2026-05-19T20:49:47.000Z (about 1 month ago)
- Last Synced: 2026-05-21T17:11:01.415Z (about 1 month ago)
- Topics: human-cell-atlas, imaging, python, transcriptomics
- Language: Python
- Homepage: https://spacetx-starfish.readthedocs.io/en/latest/
- Size: 115 MB
- Stars: 248
- Watchers: 18
- Forks: 71
- Open Issues: 175
-
Metadata Files:
- Readme: README.rst
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.rst
- License: LICENSE
Owner metadata:
- Name: spacetx
- Login: spacetx
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/37218549?v=4
- Repositories: 6
- Last Synced at: 2023-03-05T02:35:05.808Z
- Profile URL: https://github.com/spacetx
GitHub Events
Total
- Create event: 73
- Delete event: 82
- Fork event: 4
- Issue comment event: 78
- Issues event: 51
- Pull request event: 168
- Pull request review comment event: 23
- Pull request review event: 86
- Push event: 132
- Release event: 4
- Watch event: 10
- Total: 711
Last Year
- Create event: 40
- Delete event: 56
- Fork event: 2
- Issue comment event: 43
- Issues event: 23
- Pull request event: 94
- Pull request review comment event: 20
- Pull request review event: 47
- Push event: 91
- Release event: 1
- Watch event: 6
- Total: 423
Committers metadata
Last synced: 2 days ago
Total Commits: 1,512
Total Committers: 31
Avg Commits per committer: 48.774
Development Distribution Score (DDS): 0.734
Commits in past year: 64
Committers in past year: 3
Avg Commits per committer in past year: 21.333
Development Distribution Score (DDS) in past year: 0.359
| Name | Commits | |
|---|---|---|
| Tony Tung | t****g@m****g | 402 |
| Tony Tung | t****g@c****m | 300 |
| Ambrose J Carr | a****r | 208 |
| Deep Ganguli | d****i@g****m | 127 |
| shanaxel42 | s****d@c****m | 111 |
| dependabot[bot] | 4****] | 66 |
| Justin Kiggins | j****s@g****m | 63 |
| Josh Moore | j****h@g****m | 41 |
| Nicholas Mei | n****i@o****m | 36 |
| shachafl | 6****l | 35 |
| mattcai | 3****i | 31 |
| kevinyamauchi | k****i@g****m | 16 |
| freeman-lab | t****b@g****m | 16 |
| Copilot | 1****t | 12 |
| Marcus Kinsella | m****a@c****m | 11 |
| Kira Evans | c****t@k****e | 6 |
| sofroniewn | s****n@g****m | 5 |
| Deep Ganguli | d****i@s****m | 5 |
| Brian Long | b****l | 4 |
| Charlotte Soneson | c****n@g****m | 3 |
| Olga Botvinnik | o****k@g****m | 2 |
| nickeener | 3****r | 2 |
| Markus J. Ankenbrand | i****g@i****g | 2 |
| xchang1 | 3****1 | 1 |
| sgratiy | 3****y | 1 |
| MikeDMorgan | m****n@s****k | 1 |
| Ola Tarkowska | 1****a | 1 |
| Jan Eglinger | j****r@g****m | 1 |
| Gökçen Eraslan | g****n@g****m | 1 |
| Dany | 7****u | 1 |
| and 1 more... | ||
Issue and Pull Request metadata
Last synced: 3 days ago
Total issues: 54
Total pull requests: 232
Average time to close issues: 6 months
Average time to close pull requests: 4 months
Total issue authors: 21
Total pull request authors: 20
Average comments per issue: 1.22
Average comments per pull request: 1.09
Merged pull request: 119
Bot issues: 0
Bot pull requests: 125
Past year issues: 3
Past year pull requests: 43
Past year average time to close issues: N/A
Past year average time to close pull requests: 19 days
Past year issue authors: 1
Past year pull request authors: 4
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.35
Past year merged pull request: 14
Past year bot issues: 0
Past year bot pull requests: 39
Top Issue Authors
- shachafl (23)
- vals (7)
- iimog (4)
- neuromusic (2)
- mattcai (2)
- YichengShao11 (1)
- hziyin (1)
- juliomateoslangerak (1)
- shanaxel42 (1)
- shazanfar (1)
- ryandikdan (1)
- johnfmarkham (1)
- giovp (1)
- mstemmer (1)
- ambrosejcarr (1)
Top Pull Request Authors
- dependabot[bot] (125)
- shachafl (59)
- ttung (12)
- berl (6)
- neuromusic (5)
- njmei (4)
- nickeener (3)
- iimog (3)
- chaichontat (2)
- mattcai (2)
- Copilot (2)
- sgratiy (1)
- Sandmann476 (1)
- ivanmilevtues (1)
- haoxusci (1)
Top Issue Labels
- bug (39)
- docs (7)
- dependencies (6)
- feature (3)
- python (2)
- high priority (1)
Top Pull Request Labels
- dependencies (125)
- python (50)
- docs (3)
- github_actions (2)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 674 last-month
- Total dependent packages: 1
- Total dependent repositories: 5
- Total versions: 54
- Total maintainers: 4
pypi.org: starfish
Pipelines and pipeline components for the analysis of image-based transcriptomics data
- Homepage: https://spacetx-starfish.readthedocs.io/en/latest/
- Documentation: https://spacetx-starfish.readthedocs.io/en/latest/
- Licenses: MIT License
- Latest release: 0.4.0 (published 5 months ago)
- Last Synced: 2026-06-20T22:01:36.207Z (2 days ago)
- Versions: 54
- Dependent Packages: 1
- Dependent Repositories: 5
- Downloads: 674 Last month
-
Rankings:
- Stargazers count: 4.566%
- Forks count: 5.423%
- Dependent repos count: 6.624%
- Average: 9.62%
- Dependent packages count: 10.082%
- Downloads: 21.405%
- Maintainers (4)
Dependencies
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- python 3.7-slim-stretch build