https://github.com/davidnsousa/mcsd
MATLAB/Octave tool for Monte-Carlo simulations of diffusion in biological tissues
Last synced: 22 Aug 2026
https://github.com/nlgranger/SeqTools
A python library to manipulate and transform indexable data (lists, arrays, ...)
delayedcall lazy-evaluation library machine-learning mapping on-the-fly pipeline preprocessing python
Last synced: 22 Aug 2026
https://github.com/vc1492a/PyNomaly
Anomaly detection using LoOP: Local Outlier Probabilities, a local density based outlier detection method providing an outlier score in the range of [0,1].
anomalies anomaly-detection machine-learning nearest-neighbors outlier-detection outlier-scores outliers probability
Last synced: 22 Aug 2026
https://github.com/arives/rr2
R2 for correlated data; see https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syy060/5098616
Last synced: 22 Aug 2026
https://github.com/malmaud/TensorFlow.jl
A Julia wrapper for TensorFlow
gpu julia machine-learning tensorflow wrapper
Last synced: 22 Aug 2026
https://github.com/mattgolub/fixed-point-finder
FixedPointFinder: A Tensorflow toolbox for identifying and characterizing fixed points in recurrent neural networks
Last synced: 22 Aug 2026
https://github.com/rrrlw/helixvis
Visualize alpha-helical peptide sequences in R using helical wheels and wenxiang diagrams. See https://doi.org/10.21105/joss.01008 for more details.
biochemistry cran helical-wheels peptide-sequences r visualization wenxiang-diagrams
Last synced: 22 Aug 2026
https://github.com/cicirello/JavaPermutationTools
A Java library for computation on permutations and sequences
edit-distance permutation-distance permutation-distance-metrics permutations sequences string-distance
Last synced: 22 Aug 2026
https://github.com/fellstat/ipc
Tools for message passing between processes
Last synced: 22 Aug 2026
https://github.com/gomesdasilva/ACTIN
ACTIN is a Python program to calculate stellar activity indices
exoplanets radial-velocity spectroscopy stellar-activity
Last synced: 22 Aug 2026
https://github.com/oxinabox/DataDepsGenerators.jl/
Utility for developers to help define DataDeps registration blocks, for reusing existing Data with DataDeps.jl
data-management opendata openscience
Last synced: 22 Aug 2026
https://github.com/simonGreenhill/Treemaker
A Python library for creating a Newick formatted tree from a set of classification strings
classification newick newick-format phylogenetics python taxonomy
Last synced: 22 Aug 2026
https://github.com/otiai10/hotsub
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
aws batch-job bioinformatics cwl cwl-workflow docker docker-machine etl-framework gcp wdl wdl-workflow workflow workflow-engine
Last synced: 22 Aug 2026
https://github.com/daijiang/hillR
An R pakage to calculate diversity through Hill Numbers
biodiversity hill-numbers r
Last synced: 22 Aug 2026
https://github.com/spectralDNS/shenfun
High performance computational platform in Python for the spectral Galerkin method
chebyshev curvilinear-coordinates cylindrical-coordinates fenics fourier galerkin hermite hpc laguerre legendre mobius polar-coordinates python spectral spectral-methods spherical-coordinates turbulence ultraspherical
Last synced: 22 Aug 2026
https://github.com/raphaelvallat/pingouin
Statistical package in Python based on Pandas
anova bayesian-statistics circular-statistics cohens-d correlations effect-size multiple-comparisons pandas statistical-methods statistical-tests statistics ttest
Last synced: 22 Aug 2026
https://github.com/pachadotdev/gravity
R package that provides estimation methods for Gravity Models
bvu bvw ddm econometrics glm gpml gravity international-trade lm maximum-likelihood nbpml nls ols ppml r sils tobit trade
Last synced: 22 Aug 2026
https://github.com/ropensci/rcites
:package: R package to access the CITES Speciesplus database
api-client cites database endangered-species r r-package rstats trade
Last synced: 22 Aug 2026
https://bitbucket.org/cdegroot/wediff
WEdiff Automatic Differentiation Library
Last synced: 22 Aug 2026
https://github.com/ejolly/pymer4
All the convenience of lme4 in python
lme4 mixed-models python
Last synced: 22 Aug 2026
https://github.com/cMadan/ElGateau
ElGateau: A Library for Using the Elgato Stream Deck for Experimental Psychology Research
Last synced: 22 Aug 2026
https://github.com/stgl/scarplet
Topographic edge detection of fault scarps and other landforms in digital elevation data
dem fault-scarps feature-detection signal-processing template-matching
Last synced: 22 Aug 2026
https://github.com/ropensci/restez
:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R
dna entrez genbank r r-package rstats sequence
Last synced: 22 Aug 2026
https://github.com/MikeHeiber/Ising_OPV
A C++ software tool for generating and analyzing model bulk heterojunction morphologies in a parallel computing environment
materials-science organic-semiconductors
Last synced: 22 Aug 2026
https://github.com/maxrousseau/pfla
pfla: Python Facial Landmark Analysis
computer-vision machine-learning medical-image-processing statistics
Last synced: 22 Aug 2026
https://github.com/AlexPof/opycleid
Opycleid - A Python package for transformational music theory
algebraic-structures category-theory chords mathematics music-theory python3
Last synced: 22 Aug 2026
https://github.com/equib/proEQUIB
proEQUIB - IDL/GDL Library for Plasma Diagnostics and Abundance Analysis
atomic-level-populations chemical-elements gdl idl idl-library line-emissivities proequib statistical-equilibrium
Last synced: 22 Aug 2026
https://github.com/garretrc/ggvoronoi
Easy Voronoi diagram heatmaps with ggplot2
Last synced: 22 Aug 2026
https://github.com/sumbose/iRF
iterative Random Forests (iRF): iteratively grows weighted random forests, finds interaction among features
Last synced: 22 Aug 2026
https://github.com/masspastore/overlapping
Estimation of Overlapping in Empirical Distributions.
package r
Last synced: 22 Aug 2026
https://github.com/wino6687/SWEpy
Python library for scraping, subsetting, and concatenating temperature brightness data for analyzing SWE.
Last synced: 22 Aug 2026
https://github.com/romunov/wolfexplorer
Explorer designed to visualize complex multi-year multi-specimen data. Case study of Slovenian wolves.
animals cartography genetics mcp parentage r samples shiny shinydashboard wolves
Last synced: 22 Aug 2026
https://github.com/jmborr/idpflex
Analysis of intrinsically disordered proteins by comparing MD simulations to Small Angle Scattering experiments
intrinsically-disordered lmfit md neutron proteins sans saxs scattering simulations
Last synced: 22 Aug 2026
https://github.com/GPUE-group/GPUE
GPU Gross-Pitaevskii Equation numerical solver for Bose-Einstein condensates.
cuda fft gpu numerical-calculations physics quantum-mechanics research simulation superfluid
Last synced: 22 Aug 2026
https://github.com/wimvanderbauwhede/RefactorF4Acc
An Automated Fortran Code Refactoring Tool to Facilitate Acceleration of Numerical Simulations
Last synced: 22 Aug 2026
https://github.com/RuleBasedIntegration/JOSS-Publication
Text-sources for the publication of Rubi in the Journal of Open-Source Software
Last synced: 22 Aug 2026
https://github.com/telegraphic/hickle
a HDF5-based python pickle replacement
Last synced: 22 Aug 2026
https://github.com/KVSlab/bloodflow
Implementation of the 1D blood flow equations using FEniCS
Last synced: 22 Aug 2026
https://github.com/kpeeters/cadabra2
A field-theory motivated approach to computer algebra.
cadabra2 computer-algebra computer-algebra-system cplusplus mathematics physics python3 science-research symbolic-manipulation sympy tensor-algebra tensors
Last synced: 22 Aug 2026
https://github.com/PingjunChen/tissueloc
Whole Slide Digital Pathology Image Tissue Localization
computational-pathology pathology pathology-image python tissue-localization whole-slide-imaging
Last synced: 22 Aug 2026
https://github.com/xiangfstats/GenieR
Inference of demographic history from phylogeny
Last synced: 22 Aug 2026
https://github.com/AnyBody-Research-Group/AnyPyTools
Python tools and utilities for working with the AnyBody Modelling System
anybody python
Last synced: 22 Aug 2026
https://github.com/IAMconsortium/pyam
Analysis & visualization of energy & climate scenarios
analysis energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization
Last synced: 22 Aug 2026
https://github.com/psychrometrics/psychrolib
📚 Library of psychrometric functions to calculate 🌡️ thermodynamic properties of air for Python, C, C#, Fortran, R, JavaScript and VBA/Excel
ashrae c csharp dew-point-temperature engineering excel fortran humidity hvac javascript meteorology moist-air net pressure psychrometrics python relative-humidity temperature thermodynamic-properties vba
Last synced: 22 Aug 2026
https://github.com/arviz-devs/arviz
Exploratory analysis of Bayesian models with Python
bayesian closember python
Last synced: 22 Aug 2026
https://github.com/alexlenail/NN-SVG
Publication-ready NN-architecture schematics.
d3 deep-learning diagrams drawing machine-learning neural-network svg threejs
Last synced: 22 Aug 2026
https://github.com/ropensci/stats19
R package for working with open road traffic casualty data from Great Britain
r r-package rstats
Last synced: 22 Aug 2026
https://github.com/wright-group/WrightTools
Tools for loading, processing, and plotting multidimensional spectroscopy data.
python
Last synced: 22 Aug 2026
https://github.com/rhagenson/swsc
swsc implements the Sliding-Window Site Characteristics method of ultraconserved elements (UCEs) detailed by 10.1093/molbev/msy069
candidate-windows sliding-windows uce uces ultraconserved-elements-uces
Last synced: 22 Aug 2026
https://github.com/danielhatton/eights/
Automated, BS 8888-compliant first angle projection drawing module for FreeCAD
Last synced: 22 Aug 2026
https://github.com/ZijieZhaoMMHW/m_mhw1.0
A MATLAB toolbox to detect and analyze marine heatwaves (MHWs).
climate-science data-analysis heatwaves marine-heatwaves matlab
Last synced: 22 Aug 2026
https://github.com/edawson/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
genomics gfa graph-representation parsing
Last synced: 22 Aug 2026
https://github.com/weecology/portalr
A collection of functions to summarize the Portal Data
community-ecology ecology small-mammal-trapping
Last synced: 22 Aug 2026
https://github.com/PoonLab/sierra-local
Retrieve HIVdb algorithm as XML and apply locally to HIV sequences
Last synced: 22 Aug 2026
https://github.com/MikeHeiber/KMC_Lattice
A lightweight, object-oriented C++ library that contains a general framework for creating custom kinetic Monte Carlo simulation software tools.
kinetic-monte-carlo kmc
Last synced: 22 Aug 2026
https://github.com/PGijsbers/GAMA
An automated machine learning tool aimed to facilitate AutoML research.
Last synced: 22 Aug 2026
https://github.com/kmarkert/cartoee
Publication quality maps using Earth Engine and Cartopy
cartopy earth-engine plot visualization
Last synced: 22 Aug 2026
https://github.com/mgckind/easyaccess
SQL command line interpreter for astronomical surveys
astronomy interpreter python sql-query
Last synced: 22 Aug 2026
https://github.com/dfki-ric/pytransform3d
3D transformations for Python.
mathematics matplotlib python transformations visualization
Last synced: 22 Aug 2026
https://github.com/igarizio/py-school-match
Py-school-match is a Python library that implements matching algorithms to assign students to schools.
algorithms game-theory matching python3 school student
Last synced: 22 Aug 2026
https://github.com/mathLab/BladeX
BladeX - Python Blade Morphing
blade hacktoberfest iges naca procal propeller
Last synced: 22 Aug 2026
https://github.com/DTUComputeStatisticsAndDataAnalysis/MBPLS
(Multiblock) Partial Least Squares Regression for Python
bioinformatics chemometrics data-fusion data-integration data-science machine-learning metabolomics multivariate-analysis multivariate-statistics pattern-recognition subspace-learning supervised-learning
Last synced: 22 Aug 2026
https://github.com/meolic/biddy
A multi-platform Binary Decision Diagrams package
Last synced: 22 Aug 2026
https://github.com/bastistician/polyCub
An R package for numerical integration over polygonal domains
numerical-integration polygons r
Last synced: 22 Aug 2026
https://github.com/gasparl/citapp_pc
CITapp: a response time-based Concealed Information Test lie detector web application. This method aims to reveal whether or not a certain information detail (e.g. a photo taken from the scene of a recent burglary) is known to the tested person.
concealed-information-test deception forensics javascript-applications psychology-experiments response-time
Last synced: 22 Aug 2026
https://github.com/vmagnin/gtk-fortran
A GTK / Fortran binding, and its documentation (in the Wiki tab).
bindings cross-platform fortran fortran-package-manager graphical-user-interface graphics gtk gtk-fortran gtk4 gui
Last synced: 22 Aug 2026
https://github.com/SAFRAN-LAB/HODLR
A fast, accurate direct solver and determinant computation for dense linear systems
c-plus-plus fast-algorithms hierarchical-matrix kernel matrices solver
Last synced: 22 Aug 2026
https://github.com/bmorris3/arcesetc
Exposure time calculator for the ARC Echelle Spectrograph (ARCES) on the Apache Point Observatory 3.5 m Telescope
astronomy exposure-calculator spectroscopy
Last synced: 22 Aug 2026
https://github.com/andrewthomasjones/BoltzMM
Boltzmann Machines with MM Algorithms
Last synced: 22 Aug 2026
https://github.com/axopy/axopy
A Python Library for Implementing Human-Computer Interface Experiments
brain-computer-interface electrophysiology experiment-design gui human-computer-interaction prosthetics qt
Last synced: 22 Aug 2026
https://github.com/Chilipp/straditize
⛔️ Python package for digitizing pollen diagrams
Last synced: 22 Aug 2026
https://github.com/jschnab/pyms-plot
Graphical user interface for easy plotting and statistical analysis of mycorrhizal colonization data.
Last synced: 22 Aug 2026
https://github.com/pwollstadt/IDTxl
The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory.
active-information-storage complex-systems information-theory partial-information-decomposition transfer-entropy
Last synced: 22 Aug 2026
https://github.com/lateral/crystal-ball
A "navigator" for exploring 2-dimensional hyperbolic space using the Poincaré disc model. The entire graph or point configuration can be translated and rotated by dragging the ambient, and individual points can be moved, too.
geometry hyperbolic-geometry poincare-embeddings
Last synced: 22 Aug 2026
https://github.com/python-hydro/pyro2
A framework for hydrodynamics explorations and prototyping
advection astrophysical-simulation finite-volume finite-volume-methods hydrodynamics multigrid pde pyro python simulation solver
Last synced: 22 Aug 2026
https://github.com/miykael/atlasreader
Python interface for generating coordinate tables and region labels from statistical MRI images
Last synced: 22 Aug 2026
https://github.com/seabbs/getTBinR
An R package for accessing and summarising the World Health Organisation Tuberculosis data.
binder-ready data eda package r rstats shiny tb-data tb-incidence-rates tuberculosis who world-health-organization
Last synced: 22 Aug 2026
https://github.com/PlanetFormationLab/eddy
Python tools to recover precise rotation profiles of disks.
Last synced: 22 Aug 2026
https://github.com/ropensci/tacmagic
tacmagic: PET Analysis in R
mri neuroimaging neuroscience neuroscience-methods pet pet-mr positron positron-emission-tomography r statistics
Last synced: 22 Aug 2026
https://github.com/evan-l-munson/SAoTD
Sentiment Analysis of Twitter Data (saotd)
bing-lexicon latent-dirichlet-allocation n-grams plot r sentiment-analysis tidy-data topicanalysis tweets twitter-data
Last synced: 22 Aug 2026
https://github.com/tleonardi/bedparse
Python module and CLI tool to perform operations on BED files
bed-files bioinformatics cli
Last synced: 22 Aug 2026
https://github.com/a-slide/pycoQC
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
computing-metrics generates-plots jupyter-notebook nanopore
Last synced: 22 Aug 2026
https://github.com/andrewjpage/tiptoft
Predict plasmids from uncorrected long read data
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases kmer long-reads nanopore oxford-nanopore pacbio pathogen plasmid plasmidfinder research uncorrected
Last synced: 22 Aug 2026
https://github.com/atomneb/AtomNeb-idl
AtomNeb - IDL/GDL Library for Atomic Data of Ionized Nebulae
atomic-datasets atomneb chianti-atomic-database collisionally-excited-lines recombination-coefficients recombination-lines
Last synced: 22 Aug 2026
https://github.com/ScottKolo/suitesparse-matrix-collection-website
A web interface for the SuiteSparse Matrix Collection, formerly known as the University of Florida Sparse Matrix Collection
Last synced: 22 Aug 2026
