JOSS: https://github.com/a-slide/pycoQC
computing-metrics generates-plots jupyter-notebook nanopore
Score: 12.993160887260933
Last synced: about 8 hours ago
JSON representation
Repository metadata:
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
- Host: GitHub
- URL: https://github.com/a-slide/pycoQC
- Owner: a-slide
- License: gpl-3.0
- Archived: true
- Created: 2017-06-16T10:05:57.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2024-10-18T11:05:14.000Z (almost 2 years ago)
- Last Synced: 2026-07-30T14:56:24.606Z (16 days ago)
- Topics: computing-metrics, generates-plots, jupyter-notebook, nanopore
- Language: Python
- Homepage: https://a-slide.github.io/pycoQC/
- Size: 180 MB
- Stars: 288
- Watchers: 1
- Forks: 43
- Open Issues: 21
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
Owner metadata:
- Name: Adrien Leger
- Login: a-slide
- Email:
- Kind: user
- Description: Research scientist at Oxford Nanopore Technologies
- Website: https://adrienleger.com/
- Location: Oxford, UK
- Twitter: AdrienLeger2
- Company: @nanoporetech
- Icon url: https://avatars.githubusercontent.com/u/5701192?u=844fc17545dbd12d6e1a080e0dd1cf992ff18346&v=4
- Repositories: 50
- Last Synced at: 2024-12-06T22:19:31.679Z
- Profile URL: https://github.com/a-slide
GitHub Events
Total
- Fork event: 2
- Push event: 1
- Watch event: 20
- Total: 23
Last Year
- Fork event: 2
- Watch event: 1
- Total: 3
Committers metadata
Last synced: 1 day ago
Total Commits: 381
Total Committers: 6
Avg Commits per committer: 63.5
Development Distribution Score (DDS): 0.066
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| a-slide | a****g@e****k | 356 |
| Tommaso Leonardi | t****m@i****z | 17 |
| Jamin | c****u@g****m | 3 |
| Jon Sanders | j****s@o****u | 3 |
| Daniel S. Katz | d****z@i****g | 1 |
| Rene Snajder | r****r@d****e | 1 |
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 72
Total pull requests: 37
Average time to close issues: 2 months
Average time to close pull requests: 6 days
Total issue authors: 44
Total pull request authors: 6
Average comments per issue: 3.04
Average comments per pull request: 0.19
Merged pull request: 36
Bot issues: 0
Bot pull requests: 0
Past year issues: 2
Past year pull requests: 0
Past year average time to close issues: about 18 hours
Past year average time to close pull requests: N/A
Past year issue authors: 2
Past year pull request authors: 0
Past year average comments per issue: 0.5
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- a-slide (16)
- thierryjanssens (4)
- mbhall88 (3)
- inijman (3)
- sklages (3)
- splaisan (2)
- apeltzer (2)
- unique379r (2)
- wuy24 (1)
- callumparr (1)
- hrpelg (1)
- chanster-j (1)
- ktenpatel (1)
- dlbowie0 (1)
- skchronicles (1)
Top Pull Request Authors
- a-slide (31)
- tleonardi (2)
- godotgildor (1)
- snajder-r (1)
- liujamin (1)
- danielskatz (1)
Top Issue Labels
- enhancement (17)
- Waiting validation (4)
- Low_priority (3)
- help wanted (1)
- bug (1)
- reminder (1)
- wontfix (1)
Top Pull Request Labels
- enhancement (1)
Package metadata
- Total packages: 11
-
Total downloads:
- pypi: 236 last-month
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 66
- Total maintainers: 1
proxy.golang.org: github.com/a-slide/pycoQC
- Homepage:
- Documentation: https://pkg.go.dev/github.com/a-slide/pycoQC#section-documentation
- Licenses: gpl-3.0
- Latest release: v2.2.4+incompatible (published over 7 years ago)
- Last Synced: 2026-08-14T02:51:22.714Z (1 day ago)
- Versions: 4
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 5.48%
- Average: 5.664%
- Dependent repos count: 5.848%
proxy.golang.org: github.com/a-slide/pycoqc
- Homepage:
- Documentation: https://pkg.go.dev/github.com/a-slide/pycoqc#section-documentation
- Licenses: gpl-3.0
- Latest release: v2.2.4+incompatible (published over 7 years ago)
- Last Synced: 2026-08-14T02:54:55.597Z (1 day ago)
- Versions: 4
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 5.48%
- Average: 5.664%
- Dependent repos count: 5.848%
pypi.org: pycoqc
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
- Homepage: https://github.com/a-slide/pycoQC
- Documentation: https://pycoqc.readthedocs.io/
- Licenses: GPLv3
- Latest release: 2.5.2 (published over 5 years ago)
- Last Synced: 2026-08-14T02:41:35.114Z (1 day ago)
- Versions: 50
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 236 Last month
-
Rankings:
- Stargazers count: 4.612%
- Forks count: 6.526%
- Downloads: 9.205%
- Dependent packages count: 10.108%
- Average: 19.531%
- Dependent repos count: 67.204%
- Maintainers (1)
ubuntu-22.04: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Licenses:
- Latest release: 2.5.2+dfsg-3 (published 6 months ago)
- Last Synced: 2026-08-07T03:19:24.882Z (8 days ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
ubuntu-23.10: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Licenses:
- Latest release: 2.5.2+dfsg-3 (published 6 months ago)
- Last Synced: 2026-03-14T00:18:01.174Z (5 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
debian-11: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Status: removed
- Documentation: https://packages.debian.org/bullseye/pycoqc
- Licenses:
- Latest release: 2.5.2+dfsg-1 (published 6 months ago)
- Last Synced: 2026-07-26T01:02:22.755Z (20 days ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
ubuntu-23.04: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Licenses:
- Latest release: 2.5.2+dfsg-3 (published 6 months ago)
- Last Synced: 2026-03-12T00:20:31.879Z (5 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
debian-13: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Documentation: https://packages.debian.org/trixie/pycoqc
- Licenses:
- Latest release: 2.5.2+dfsg-4 (published 6 months ago)
- Last Synced: 2026-03-14T15:27:33.269Z (5 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
ubuntu-24.10: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Licenses:
- Latest release: 2.5.2+dfsg-3 (published 6 months ago)
- Last Synced: 2026-03-09T11:07:26.917Z (5 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
ubuntu-24.04: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Licenses:
- Latest release: 2.5.2+dfsg-3 (published 6 months ago)
- Last Synced: 2026-07-28T14:06:30.305Z (18 days ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
debian-12: pycoqc
- Homepage: https://github.com/a-slide/pycoQC
- Documentation: https://packages.debian.org/bookworm/pycoqc
- Licenses: gpl-3.0
- Latest release: 2.5.2+dfsg-3 (published 6 months ago)
- Last Synced: 2026-03-13T07:44:54.201Z (5 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
Dependencies
- dependency_1__ *
- dependency_2__ *
- dependency_3__ *
- dependency_4__ *
- dependency_5__ *
- dependency_6__ *
- dependency_7__ *
- dependency_8__ *
- h5py >=3.1
- jinja2 >=2.10
- numpy >=1.19
- pandas >=1.1
- plotly ==4.1.0
- pysam >=0.16
- scipy >=1.5
- tqdm >=4.54