JOSS: https://github.com/andrewjpage/tiptoft
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases kmer long-reads nanopore oxford-nanopore pacbio pathogen plasmid plasmidfinder research uncorrected
Score: 8.144388865547622
Last synced: about 19 hours ago
JSON representation
Repository metadata:
Predict plasmids from uncorrected long read data
- Host: GitHub
- URL: https://github.com/andrewjpage/tiptoft
- Owner: andrewjpage
- License: gpl-3.0
- Created: 2018-04-03T14:59:08.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2026-02-27T16:08:44.000Z (4 months ago)
- Last Synced: 2026-04-14T15:05:28.584Z (2 months ago)
- Topics: bioinformatics, bioinformatics-pipeline, genomics, global-health, infectious-diseases, kmer, long-reads, nanopore, oxford-nanopore, pacbio, pathogen, plasmid, plasmidfinder, research, uncorrected
- Language: Python
- Size: 37.9 MB
- Stars: 41
- Watchers: 3
- Forks: 10
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
- Authors: AUTHORS
Owner metadata:
- Name: andrewjpage
- Login: andrewjpage
- Email:
- Kind: user
- Description: Director of Technical Innovation
- Website:
- Location: Cambridge, UK
- Twitter:
- Company: Theiagen Genomics
- Icon url: https://avatars.githubusercontent.com/u/24151?u=59f64e16384d0930e8f832285e77fb7127505089&v=4
- Repositories: 111
- Last Synced at: 2024-12-06T21:47:30.306Z
- Profile URL: https://github.com/andrewjpage
GitHub Events
Total
- Total: 0
Last Year
- Total: 0
Committers metadata
Last synced: 7 months ago
Total Commits: 84
Total Committers: 6
Avg Commits per committer: 14.0
Development Distribution Score (DDS): 0.119
Commits in past year: 4
Committers in past year: 1
Avg Commits per committer in past year: 4.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Andrew Page | a****e@q****k | 74 |
| copilot-swe-agent[bot] | 1****t | 4 |
| Torsten Seemann | t****n | 2 |
| Tiago Jesu | t****2@g****m | 2 |
| Thanh Lê | l****k@g****m | 1 |
| Andrew Page (QIB) | p****a@n****k | 1 |
Issue and Pull Request metadata
Last synced: 8 months ago
Total issues: 18
Total pull requests: 11
Average time to close issues: 19 days
Average time to close pull requests: about 1 hour
Total issue authors: 6
Total pull request authors: 5
Average comments per issue: 1.33
Average comments per pull request: 0.36
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: 39 minutes
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- tseemann (11)
- ctb (3)
- Niicii (1)
- azneto (1)
- conte1 (1)
- samlipworth (1)
Top Pull Request Authors
- andrewjpage (6)
- tseemann (2)
- tiagofilipe12 (1)
- Copilot (1)
- thanhleviet (1)
Top Issue Labels
- enhancement (2)
- bug (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 12 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 6
- Total maintainers: 1
pypi.org: tiptoft
tiptoft: predict which plasmid should be present from uncorrected long read data
- Homepage: https://github.com/andrewjpage/tiptoft
- Documentation: https://tiptoft.readthedocs.io/
- Licenses: GPLv3
- Latest release: 1.0.2 (published over 6 years ago)
- Last Synced: 2025-11-25T17:06:54.057Z (7 months ago)
- Versions: 6
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 12 Last month
-
Rankings:
- Dependent packages count: 10.119%
- Stargazers count: 10.605%
- Forks count: 10.896%
- Average: 17.744%
- Dependent repos count: 21.545%
- Downloads: 35.553%
- Maintainers (1)
Dependencies
- biopython *
- cython *
- pyfastaq *