restez

dna entrez genbank r r-package rstats sequence

Score: 11.6906364092065

Last synced: about 7 hours ago
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Repository metadata:

:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R

Host: GitHub
URL: https://github.com/ropensci/restez
Owner: ropensci
License: other
Created: 2018-04-11T14:38:21.000Z (about 8 years ago)
Default Branch: main
Last Pushed: 2025-03-06T23:59:20.000Z (over 1 year ago)
Last Synced: 2025-10-24T01:51:27.215Z (8 months ago)
Topics: dna, entrez, genbank, r, r-package, rstats, sequence
Language: R
Homepage: https://docs.ropensci.org/restez
Size: 10 MB
Stars: 27
Watchers: 6
Forks: 5
Open Issues: 9
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Codemeta: codemeta.json

CodeMeta metadata:

@context: https://doi.org/10.5063/schema/codemeta-2.0
@type: SoftwareSourceCode
Identifier: restez
Description: Download large sections of 'GenBank' and generate a local SQL-based database. A user can then query this database using 'restez' functions or through 'rentrez' wrappers.
Name: restez: Create and Query a Local Copy of 'GenBank' in R
Related link:
- https://docs.ropensci.org/restez/
- https://CRAN.R-project.org/package=restez
Code repository: https://github.com/ropensci/restez
Issue tracker: https://github.com/ropensci/restez/issues
License: https://spdx.org/licenses/MIT
Version: 2.1.3.9000
Programming language:
- @type: ComputerLanguage
- Name: R
- Url: https://r-project.org
Runtime platform: R version 4.2.1 (2022-06-23)
Provider:
- @id: https://cran.r-project.org
- @type: Organization
- Name: Comprehensive R Archive Network (CRAN)
- Url: https://cran.r-project.org
Author:
- - @type: Person
  - Given name: Joel H.
  - Family name: Nitta
  - Email: joelnitta@gmail.com
  - @id: https://orcid.org/0000-0003-4719-7472
- - @type: Person
  - Given name: Dom
  - Family name: Bennett
  - Email: dominic.john.bennett@gmail.com
  - @id: https://orcid.org/0000-0003-2722-1359
Maintainer:
- - @type: Person
  - Given name: Joel H.
  - Family name: Nitta
  - Email: joelnitta@gmail.com
  - @id: https://orcid.org/0000-0003-4719-7472
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Software requirements:
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  - Version: >= 3.3.0
- 2:
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  - Name: rentrez
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- System requirements:
File size: 1676.932KB
Citation:
- - @type: ScholarlyArticle
  - Date published: 2018
  - Author:
    - - @type: Organization
      - Name: Bennett
    - - @type: Organization
      - Name: D.J.
    - - @type: Organization
      - Name: Hettling
    - - @type: Organization
      - Name: H.
    - - @type: Organization
      - Name: Silvestro
    - - @type: Organization
      - Name: D.
    - - @type: Organization
      - Name: Vos
    - - @type: Organization
      - Name: R.
    - - @type: Organization
      - Name: Antonelli
    - - @type: Organization
      - Name: A.
  - Name: restez: Create and Query a Local Copy of GenBank in R
  - Identifier: 10.21105/joss.01102
  - Pagination: 1102
  - @id: https://doi.org/10.21105/joss.01102
  - Same as: https://doi.org/10.21105/joss.01102
  - Is part of:
    - @type: PublicationIssue
    - Issue number: 31
    - Date published: 2018
    - Is part of:
      - @type:
        PublicationVolume
        Periodical
      - Volume number: 3
      - Name: The Journal of Open Source Software
Release notes: https://github.com/ropensci/restez/blob/master/NEWS.md
Readme: https://github.com/ropensci/restez/blob/main/README.md
Cont integration:
- https://github.com/ropensci/restez/actions
- https://coveralls.io/github/ropensci/restez?branch=master
Review:
- @type: Review
- Url: https://github.com/ropensci/software-review/issues/232
- Provider: https://ropensci.org
Keywords:
- genbank
- dna
- sequence
- entrez
- r
- r-package
- rstats

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description:
Website: https://ropensci.org/
Location: Berkeley, CA
Twitter: rOpenSci
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 307
Last Synced at: 2023-03-10T20:30:59.242Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Create event: 2
Delete event: 2
Issue comment event: 3
Issues event: 7
Pull request event: 3
Push event: 7
Watch event: 2
Total: 26

Last Year

Create event: 2
Delete event: 2
Issue comment event: 3
Issues event: 7
Pull request event: 3
Push event: 7
Watch event: 2
Total: 26

Committers metadata

Last synced: 8 months ago

Total Commits: 348
Total Committers: 6
Avg Commits per committer: 58.0
Development Distribution Score (DDS): 0.368

Commits in past year: 12
Committers in past year: 1
Avg Commits per committer in past year: 12.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Dominic Bennett	d**t@g**m	220
Joel Nitta	j**a@g**m	112
Jeroen Ooms	j**s@g**m	11
Rutger Vos	r**o@g**m	2
Maëlle Salmon	m**n@y**e	2
Ben Tupper	b**r@b**g	1

Issue and Pull Request metadata

Last synced: 8 months ago

Total issues: 47
Total pull requests: 23
Average time to close issues: 3 months
Average time to close pull requests: 2 days
Total issue authors: 15
Total pull request authors: 3
Average comments per issue: 1.49
Average comments per pull request: 0.13
Merged pull request: 21
Bot issues: 0
Bot pull requests: 0

Past year issues: 4
Past year pull requests: 4
Past year average time to close issues: 10 days
Past year average time to close pull requests: 1 day
Past year issue authors: 3
Past year pull request authors: 1
Past year average comments per issue: 1.0
Past year average comments per pull request: 0.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ropensci/restez

Top Issue Authors

joelnitta (15)
DomBennett (13)
maelle (4)
krlmlr (2)
bioxenia (2)
btupper (2)
cbird808 (1)
hadley (1)
sckott (1)
terrimporter (1)
JanPerret (1)
chow42 (1)
Maxim-Karpov (1)
RinLinux (1)
jeroen (1)

Top Pull Request Authors

joelnitta (21)
btupper (2)
maelle (1)

Top Issue Labels

enhancement (16)
review (5)
bug (2)

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- cran: 551 last-month
Total dependent packages: 0
Total dependent repositories: 1
Total versions: 5
Total maintainers: 1

cran.r-project.org: restez

Create and Query a Local Copy of 'GenBank' in R

Homepage: https://github.com/ropensci/restez
Documentation: http://cran.r-project.org/web/packages/restez/restez.pdf
Licenses: MIT + file LICENSE
Latest release: 2.1.5 (published over 1 year ago)
Last Synced: 2025-10-30T04:48:43.492Z (8 months ago)
Versions: 5
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 551 Last month
Rankings:
- Stargazers count: 10.609%
- Forks count: 12.178%
- Average: 22.392%
- Dependent repos count: 23.862%
- Dependent packages count: 28.667%
- Downloads: 36.644%
Maintainers (1)
- joelnitta@gmail.com

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