https://github.com/sgrieve/spatial_efd
A spatial aware implementation of elliptical Fourier analysis
fourier-analysis geoscience geospatial gis python-library spatial-analysis spatial-functions
Last synced: 22 Aug 2026
https://github.com/ropensci-archive/lawn
:no_entry: ARCHIVED :no_entry: Client for 'Turfjs' for 'Geospatial' Analysis
geojson geospatial r r-package rstats turf turfjs
Last synced: 22 Aug 2026
https://github.com/migueldvb/cine
Calculate infrared pumping rates by solar radiation
astronomy comets python science
Last synced: 22 Aug 2026
https://github.com/hpchud/vccjs
A framework for building HPC and parallel containers
Last synced: 22 Aug 2026
https://github.com/andyyao95/walkr
This package implements MCMC random walks in the intersection of the n-simplex and hyperplanes
Last synced: 22 Aug 2026
https://github.com/scikit-learn-contrib/hdbscan
A high performance implementation of HDBSCAN clustering.
cluster-analysis clustering clustering-algorithm clustering-evaluation machine-learning machine-learning-algorithms
Last synced: 22 Aug 2026
https://github.com/JunoLab/Weave.jl
Scientific reports/literate programming for Julia
julia literate-programming reproducible-research scientific-reports scientific-workflows
Last synced: 22 Aug 2026
https://github.com/ropensci/getCRUCLdata
CRU CL v. 2.0 Climatology Client for R
climate-data cru cru-cl2 data-access diurnal-temperature elevation frost peer-reviewed r r-package rainfall relative-humidity rstats solar-radiation temperature wind
Last synced: 22 Aug 2026
https://github.com/msmexplorer/msmexplorer
Data visualizations for biomolecular dynamics
Last synced: 22 Aug 2026
https://github.com/elabftw/elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
docker laboratory lims mysql notebook php
Last synced: 22 Aug 2026
https://github.com/NickC1/skedm
Empirical dynamic modeling in scikit-learn's style
Last synced: 22 Aug 2026
https://github.com/gboeing/osmnx/
Download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.
geography geospatial gis mapping networks networkx openstreetmap osm osmnx overpass-api python routing spatial spatial-analysis spatial-data street-networks transport transportation urban urban-planning
Last synced: 22 Aug 2026
https://github.com/openclimatedata/pyhector/
Python interface for the simple global climate carbon-cycle model Hector
climate-model hector-model python-wrapper
Last synced: 22 Aug 2026
https://github.com/AFIT-R/learningCurve
An Implementation of Crawford's and Wright's Learning Curve Production Functions
cran-r learning-curves r
Last synced: 22 Aug 2026
https://github.com/kactus2/kactus2dev
Kactus2 is a graphical EDA tool based on the IP-XACT standard.
design eda fpga hardware hdl ip-xact mpsoc reuse system-on-chip
Last synced: 22 Aug 2026
https://github.com/dgerosa/filltex
Automatic queries to ADS and INSPIRE databases to fill LaTex bibliography
Last synced: 22 Aug 2026
https://github.com/sanger-pathogens/saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Last synced: 22 Aug 2026
https://github.com/cmutel/pandarus
GIS toolkit for regionalized life cycle assessment
Last synced: 22 Aug 2026
https://github.com/luk87/YoungTab
YoungTab is a mathematical tool to compute the dimension of irreducible representations of the classical Lie algebras A, B, C, D, described by Young tableaux.
Last synced: 22 Aug 2026
https://github.com/reichlab/flusight
Influenza forecasts visualizer
epidemiology forecasting influenza prediction statistics visualizer
Last synced: 22 Aug 2026
https://github.com/k3jph/bumblebees
Virtual Bumblebees
agent-based-modeling artificial-life simulation virtual-ants
Last synced: 22 Aug 2026
https://github.com/gauteh/ibcao_py
A matplotlib library for using the International Bathymetric Chart of the Arctic Ocean with cartopy and matplotlib
arctic-ocean gis ibcao matplotlib python
Last synced: 22 Aug 2026
https://github.com/eclipse-mosquitto/mosquitto
Eclipse Mosquitto - An open source MQTT broker
broker eclipse-iot mosquitto mqtt
Last synced: 22 Aug 2026
https://github.com/kdm9/libqcpp
libqc++: C++11 library for next-gen sequence quality control and assessment.
Last synced: 22 Aug 2026
https://github.com/bjmorgan/lattice_mc
Lattice gas Monte Carlo simulation code
kinetic-monte-carlo lattice-gas monte-carlo monte-carlo-simulation solid-state-physics
Last synced: 22 Aug 2026
https://github.com/andim/noisyopt
Python library for optimizing noisy functions.
optimization
Last synced: 22 Aug 2026
https://github.com/rorynolan/filesstrings
A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to sensibly rename microscopy images.
Last synced: 22 Aug 2026
https://github.com/BioPandas/biopandas
Working with molecular structures in pandas DataFrames
bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure
Last synced: 22 Aug 2026
https://github.com/roguephysicist/SHGYield
A Python program for calculating the surface SHG yield for semiconductors.
nonlinear numpy optics physics python scipy second-harmonic semiconductor semiconductor-physics semiconductor-surfaces shg solid-state-physics spectroscopy surfaces
Last synced: 22 Aug 2026
https://github.com/jdidion/xphyle
Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compression format. (production)
Last synced: 22 Aug 2026
https://github.com/ben-aaron188/netanos
NETANOS: Named entity-based Text Anonymization for Open Science'
Last synced: 22 Aug 2026
https://github.com/ropensci/osmdata
R package for downloading OpenStreetMap data
cpp openstreetmap osm osm-data overpass-api peer-reviewed r r-package rstats
Last synced: 22 Aug 2026
https://github.com/dib-lab/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python
Last synced: 22 Aug 2026
https://github.com/domoritz/label_generator
Training data generator for text detection
deep-learning neural-network python text-detection
Last synced: 22 Aug 2026
https://github.com/barbagroup/cuIBM
cuIBM: a GPU-based immersed boundary method code.
Last synced: 22 Aug 2026
https://github.com/nhejazi/biotmle
:package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery
bioconductor bioconductor-package bioconductor-packages bioinformatics biomarker-discovery biostatistics causal-inference computational-biology machine-learning r statistics targeted-learning
Last synced: 22 Aug 2026
https://github.com/OpenSpace/OpenSpace
This is the official GitHub repository for OpenSpace: an open source astrovisualization project. For instructions on how to build and run OpenSpace, see the Getting Started Guides on the wiki page at http://docs.openspaceproject.com.
astronomy data-visualization planetarium science space universe visualization
Last synced: 22 Aug 2026
https://github.com/dhermes/bezier
Helper for Bézier Curves, Triangles, and Higher Order Objects
Last synced: 22 Aug 2026
https://github.com/ropensci-archive/rtimicropem
:no_entry: ARCHIVED :no_entry: Supports the Analysis of RTI MicroPEM Output Files
peer-reviewed pm25 r r-package rstats rti-micropem
Last synced: 22 Aug 2026
https://github.com/IndEcol/country_converter
The country converter (coco) - a Python package for converting country names between different classification schemes.
Last synced: 22 Aug 2026
https://github.com/TACC/launcher
A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job
batch-processing heterogeneous hpc launcher parametric-submission shell tacc xsede
Last synced: 22 Aug 2026
https://github.com/scikit-hep/root_numpy
The interface between ROOT and NumPy
cern cython hep numpy python root
Last synced: 22 Aug 2026
https://github.com/ropensci/iheatmapr
Complex, interactive heatmaps in R
data-visualization heatmap interactive-visualizations peer-reviewed plotly r r-package rstats
Last synced: 22 Aug 2026
https://github.com/ropensci/RefManageR
R package RefManageR
peer-reviewed r r-package rstats
Last synced: 22 Aug 2026
https://github.com/vanheeringen-lab/genomepy
genes and genomes at your fingertips
bioconda ensembl genome ncbi python ucsc
Last synced: 22 Aug 2026
https://github.com/xuanxu/nimbus
Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context
random-forest
Last synced: 22 Aug 2026
https://github.com/ropensci/visdat
Preliminary Exploratory Visualisation of Data
exploratory-data-analysis missingness peer-reviewed r r-package ropensci rstats visualisation
Last synced: 22 Aug 2026
https://github.com/Chilipp/psyplot
Python package for interactive data visualization
Last synced: 22 Aug 2026
https://github.com/MonashBioinformaticsPlatform/varistran
R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
Last synced: 22 Aug 2026
https://github.com/SebastianoF/bruker2nifti
Medical image format converter: from raw Bruker ParaVision to nifti.
Last synced: 22 Aug 2026
https://github.com/pjamesjoyce/lcopt
Create foreground LCA models via an intuitive user interface and analyse them using Brightway2
brightway2 foreground-models gui lca python
Last synced: 22 Aug 2026
https://github.com/ornl-ndav/django-remote-submission
The django-remote-submission is an asynchronous task/job queue using Celery Distributed Task Queue and Redis in-memory data structure store as message broker.
Last synced: 22 Aug 2026
https://github.com/barbagroup/AmgXWrapper
AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library
amgx gpu mpi nvidia petsc
Last synced: 22 Aug 2026
https://github.com/fstrozzi/bioruby-pipengine
An ultra light YAML-based pipeline execution engine
Last synced: 22 Aug 2026
https://github.com/sequana/sequana/
Sequana: a set of Snakemake NGS pipelines
coverage de-novo ngs pacbio rna-seq sequanix snakemake taxonomy variant-calling
Last synced: 22 Aug 2026
https://github.com/ashleefv/ACEInhibPKPD
PKPD model for ACE inhibition; educational drug dosing app for treatment of high blood pressure
Last synced: 22 Aug 2026
https://github.com/adrn/schwimmbad
A common interface to processing pools.
mpi multiprocessing parallel-computing
Last synced: 22 Aug 2026
https://github.com/raamana/pyradigm
Research data management in biomedical and machine learning applications
automation biomedical data-integration data-structures datascience datastructures machine-learning machine-learning-workflows medical-data neuroimaging neuroinformatics neuroscience pandas python userfriendly workflow
Last synced: 22 Aug 2026
https://github.com/ropensci-archive/bittrex
:warning: ARCHIVED :warning: A R Client for the Bittrex Crypto-Currency Exchange
crypto-currency-exchanges finance peer-reviewed r r-package rstats
Last synced: 22 Aug 2026
https://github.com/array-split/array_split
Python package for decomposing multi-dimensional arrays into sub-arrays (slices) according to multiple criteria.
Last synced: 22 Aug 2026
https://github.com/sepandhaghighi/pyrgg
🔧 Python Random Graph Generator
beerpay generator gpu graph-computing graph-generation graph-generator gtgraph math mathematics python python3 script
Last synced: 22 Aug 2026
https://github.com/simupy/simupy
A framework for modeling and simulating dynamical systems
block-diagram python simulation simulation-framework simulation-modeling simulink
Last synced: 22 Aug 2026
https://github.com/jakobbossek/mcMST
Algorithms to solve the multi-criteria minimum spanning tree problem (mcMST) in R
cran evolutionary-algorithms mcmst minimum-spanning-trees multi-objective-optimization r spanningtrees
Last synced: 22 Aug 2026
https://github.com/ropensci-archive/bomrang
:warning: ARCHIVED :warning: Australian government Bureau of Meteorology (BOM) data client for R
australia australia-bureau-of-meteorology bom meteorological-data meteorology peer-reviewed r r-package rstats weather weather-data weather-forecast
Last synced: 22 Aug 2026
https://github.com/ecrl/ecnet
QSPR-based PyTorch models for fuel property prediction, with bundled datasets and analytical blend rules
cetane-number computational-chemistry fuel-property-prediction machine-learning neural-network pytorch qspr
Last synced: 22 Aug 2026
https://github.com/timfolsom/hei
R Package for Calculating Healthy Eating Index (HEI) Scores
Last synced: 22 Aug 2026
https://github.com/ContextLab/quail
A python toolbox for analyzing and plotting free recall data
memory psychology-experiments python-toolbox speech-to-text
Last synced: 22 Aug 2026
https://github.com/mattbellis/hmis
A set of Python tools to parse files from a standard dump of HMIS (Homeless Management Information System) data and do some simple analysis and visualization.
Last synced: 22 Aug 2026
https://github.com/adrn/gala
Galactic and gravitational dynamics in Python
astronomy astrophysics astropy-affiliated dynamics physics python
Last synced: 22 Aug 2026
https://github.com/uglymol/uglymol
Macromolecular viewer for crystallographers (WebGL)
ccp4 crystallography electron-density macromolecular-crystallography molecular-graphics webgl
Last synced: 22 Aug 2026
https://github.com/conradsnicta/armadillo-gmm
gmm_diag and gmm_full: C++ classes for multi-threaded Gaussian mixture models and Expectation-Maximisation
armadillo clustering clustering-algorithm cpp em-algorithm expectation-maximization gaussian-mixture-models gmm k-means k-means-clustering machine-learning mapreduce openmp statistics
Last synced: 22 Aug 2026
https://github.com/singularityhub/sregistry
server for storage and management of singularity images
containers management registry singularity singularity-containers singularityhub
Last synced: 22 Aug 2026
https://github.com/genexplain/geneXplainR
An R interface for the geneXplain platform
Last synced: 22 Aug 2026
https://github.com/bebatut/enasearch
A Python library for interacting with ENA's API
api api-client ena
Last synced: 22 Aug 2026
https://github.com/cokelaer/spectrum
Spectral Analysis in Python
arma fourier pburg periodogram psd python spectral
Last synced: 22 Aug 2026
https://github.com/JuliaDynamics/ResumableFunctions.jl
C# style generators a.k.a. semi-coroutines for Julia.
finite-state-machine iterator julia semi-coroutine stackless
Last synced: 22 Aug 2026
https://github.com/josejimenezluna/pyGPGO
Bayesian optimization for Python
bayesian machine-learning optimization
Last synced: 22 Aug 2026
https://github.com/mdbloice/Augmentor
Image augmentation library in Python for machine learning.
augmentation deep-learning machine-learning neural-networks
Last synced: 22 Aug 2026
https://github.com/haythamfayek/MatDL
A Lightweight Deep Learning Library in MATLAB
deep-learning machine-learning neural-networks
Last synced: 22 Aug 2026
https://github.com/scikit-learn-contrib/forest-confidence-interval
Confidence intervals for scikit-learn forest algorithms
Last synced: 22 Aug 2026
https://github.com/randlab/hytool
Hytool is a matlab toolbox for the interpretation of hydraulic tests in wells. The toolbox contains analytical solutions used to describe groundwater flow around wells, and functions for importing, displaying, and fitting a model to the data.
data-analysis hydrogeology matlab pumping-test well-testing
Last synced: 22 Aug 2026
https://github.com/ropensci/codemetar
an R package for generating and working with codemeta
codemeta json-ld metadata peer-reviewed r r-package rstats
Last synced: 22 Aug 2026
https://github.com/weecology/retriever
Quickly download, clean up, and install public datasets into a database management system
data data-retrieval data-science dataset datasets hacktobefest python
Last synced: 22 Aug 2026
https://github.com/msmbuilder/mdentropy/
Analyze correlated motions in MD trajectories with only a few lines of Python.
Last synced: 22 Aug 2026
https://github.com/JuliaDynamics/DynamicalBilliards.jl
An easy-to-use, modular, extendable and absurdly fast Julia package for dynamical billiards in two dimensions.
billiard-systems billiards chaos geometry julia julialang lyapunov-spectrum models particles physics
Last synced: 22 Aug 2026
https://github.com/virgesmith/UKCensusAPI
UK Census Data queries and downloads from python or R
data-science python r
Last synced: 22 Aug 2026
https://github.com/neuropsychology/Neuropsydia.py/
A Python Module for Creating Experiments, Tasks and Questionnaires.
assessment experiments neuropsychology psychology python questionnaire tasks
Last synced: 22 Aug 2026
https://github.com/raamana/hiwenet
Histogram-weighted Networks for Connectivity & Advanced Analysis in Neuroscience
biomarkers connectivity feature-extraction graph histogram-weighted-networks machine-learning neuroimaging neuroscience
Last synced: 22 Aug 2026
https://github.com/pygbe/pygbe
PyGBe: Python, GPUs and Boundary elements for electrostatics
Last synced: 22 Aug 2026
https://github.com/ropensci/bikedata
:bike: Extract data from public hire bicycle systems
bicycle-hire bicycle-hire-systems bike-data bike-hire database peer-reviewed r r-package rstats
Last synced: 22 Aug 2026
https://github.com/Genomon-Project/paplot/
paplot creates various dynamic and interactive reports for cancer genome analysis.
Last synced: 22 Aug 2026
