JOSS: https://github.com/vanheeringen-lab/genomepy
bioconda ensembl genome ncbi python ucsc
Score: 18.650694529071387
Last synced: about 3 hours ago
JSON representation
Repository metadata:
genes and genomes at your fingertips
- Host: GitHub
- URL: https://github.com/vanheeringen-lab/genomepy
- Owner: vanheeringen-lab
- License: mit
- Created: 2016-12-16T14:11:17.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2026-06-09T07:00:01.000Z (14 days ago)
- Last Synced: 2026-06-15T21:05:31.627Z (7 days ago)
- Topics: bioconda, ensembl, genome, ncbi, python, ucsc
- Language: Python
- Homepage: https://vanheeringen-lab.github.io/genomepy/
- Size: 12.1 MB
- Stars: 413
- Watchers: 4
- Forks: 41
- Open Issues: 16
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
Owner metadata:
- Name: vanheeringen-lab
- Login: vanheeringen-lab
- Email: s.vanheeringen@science.ru.nl
- Kind: organization
- Description: Repository of the group of Simon van Heeringen @ Radboud University
- Website:
- Location: Nijmegen, the Netherlands
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/42635190?v=4
- Repositories: 23
- Last Synced at: 2024-03-25T23:15:44.747Z
- Profile URL: https://github.com/vanheeringen-lab
GitHub Events
Total
- Fork event: 2
- Issue comment event: 9
- Issues event: 13
- Pull request event: 2
- Push event: 31
- Release event: 2
- Watch event: 18
- Total: 77
Last Year
- Fork event: 1
- Issues event: 1
- Pull request event: 1
- Push event: 6
- Release event: 1
- Watch event: 5
- Total: 15
Committers metadata
Last synced: 3 days ago
Total Commits: 671
Total Committers: 8
Avg Commits per committer: 83.875
Development Distribution Score (DDS): 0.475
Commits in past year: 19
Committers in past year: 2
Avg Commits per committer in past year: 9.5
Development Distribution Score (DDS) in past year: 0.053
| Name | Commits | |
|---|---|---|
| siebrenf | s****f@g****m | 352 |
| simonvh | s****n@g****m | 292 |
| Maarten van der Sande | m****e@h****m | 19 |
| dohlee | d****o@g****m | 3 |
| tschaefers | 5****f | 2 |
| TrellixVulnTeam | 1****m | 1 |
| Brice Letcher | b****r@e****k | 1 |
| Arfon Smith | a****n | 1 |
Issue and Pull Request metadata
Last synced: 11 days ago
Total issues: 61
Total pull requests: 69
Average time to close issues: 8 months
Average time to close pull requests: 18 days
Total issue authors: 38
Total pull request authors: 6
Average comments per issue: 2.1
Average comments per pull request: 0.91
Merged pull request: 64
Bot issues: 0
Bot pull requests: 0
Past year issues: 8
Past year pull requests: 2
Past year average time to close issues: 13 days
Past year average time to close pull requests: 2 minutes
Past year issue authors: 6
Past year pull request authors: 1
Past year average comments per issue: 0.5
Past year average comments per pull request: 0.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- simonvh (10)
- siebrenf (8)
- antonkulaga (4)
- nick-youngblut (3)
- schmucr1 (2)
- bricoletc (2)
- sojichld (1)
- ctb (1)
- ori-kron-wis (1)
- oriolfornes (1)
- laserson (1)
- avantikalal (1)
- mzavolan (1)
- Mr-Milk (1)
- uniqueg (1)
Top Pull Request Authors
- siebrenf (54)
- simonvh (7)
- Maarten-vd-Sande (3)
- tilschaef (3)
- bricoletc (1)
- TrellixVulnTeam (1)
Top Issue Labels
- enhancement (9)
- minor (4)
- question (1)
- bug (1)
Top Pull Request Labels
- concept (1)
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 36,660 last-month
- Total dependent packages: 6 (may contain duplicates)
- Total dependent repositories: 5 (may contain duplicates)
- Total versions: 40
- Total maintainers: 2
pypi.org: genomepy
Genes and genomes at your fingertips
- Homepage: https://github.com/vanheeringen-lab/genomepy
- Documentation: https://vanheeringen-lab.github.io/genomepy/
- Licenses: MIT License
- Latest release: 0.16.4 (published 14 days ago)
- Last Synced: 2026-06-19T23:00:47.202Z (3 days ago)
- Versions: 39
- Dependent Packages: 6
- Dependent Repositories: 5
- Downloads: 36,660 Last month
- Docker Downloads: 0
-
Rankings:
- Dependent packages count: 1.588%
- Stargazers count: 3.396%
- Downloads: 3.813%
- Average: 4.443%
- Docker downloads count: 4.628%
- Dependent repos count: 6.614%
- Forks count: 6.619%
- Maintainers (2)
guix: python-genomepy
Genes and genomes at your fingertips
- Homepage: https://vanheeringen-lab.github.io/genomepy/
- Documentation: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n8920
- Licenses: expat
- Latest release: 0.16.3 (published 4 months ago)
- Last Synced: 2026-04-07T15:01:53.388Z (3 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
Dependencies
- appdirs
- autoflake 1.4.*
- biopython >=1.73
- black 21.5b2.*
- bowtie2
- bwa
- click
- colorama
- diskcache
- flake8 3.9.2.*
- flake8-bugbear 21.4.3.*
- gmap
- hisat2
- isort 5.9.1.*
- loguru
- minimap2
- mygene
- mysql-connector-python
- norns >=0.1.5
- numpy
- pandas
- pre-commit
- pyfaidx >=0.5.7
- pytest
- pytest-cov
- pytest-rerunfailures
- requests
- setuptools
- star
- tabix
- tqdm >=4.51
- ucsc-bedtogenepred
- ucsc-genepredtobed
- ucsc-genepredtogtf
- ucsc-gff3togenepred
- ucsc-gtftogenepred
- JamesIves/github-pages-deploy-action v4 composite
- actions/checkout v3 composite