JOSS: https://github.com/BioPandas/biopandas
bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure
Score: 12.537029701463277
Last synced: about 3 hours ago
JSON representation
Repository metadata:
Working with molecular structures in pandas DataFrames
- Host: GitHub
- URL: https://github.com/BioPandas/biopandas
- Owner: BioPandas
- License: bsd-3-clause
- Created: 2015-11-21T00:00:14.000Z (over 10 years ago)
- Default Branch: main
- Last Pushed: 2026-05-22T18:26:43.000Z (about 1 month ago)
- Last Synced: 2026-06-13T20:07:09.979Z (9 days ago)
- Topics: bioinformatics, computational-biology, drug-discovery, mol2, molecular-structures, molecule, molecules, pandas-dataframe, pdb, pdb-files, protein-structure
- Language: Python
- Homepage: https://BioPandas.github.io/biopandas/
- Size: 22.2 MB
- Stars: 752
- Watchers: 15
- Forks: 118
- Open Issues: 28
-
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE.txt
- Code of conduct: .github/CODE_OF_CONDUCT.md
Owner metadata:
- Name: BioPandas
- Login: BioPandas
- Email:
- Kind: organization
- Description: Working with molecular structures in pandas DataFrames
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/122223269?v=4
- Repositories: 1
- Last Synced at: 2023-03-07T16:50:57.540Z
- Profile URL: https://github.com/BioPandas
GitHub Events
Total
- Create event: 1
- Issue comment event: 4
- Issues event: 2
- Pull request event: 3
- Pull request review event: 1
- Watch event: 36
- Total: 47
Last Year
- Create event: 1
- Issue comment event: 2
- Issues event: 1
- Pull request event: 3
- Pull request review event: 1
- Watch event: 9
- Total: 17
Committers metadata
Last synced: 3 days ago
Total Commits: 289
Total Committers: 17
Avg Commits per committer: 17.0
Development Distribution Score (DDS): 0.467
Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| rasbt | m****l@s****m | 154 |
| Arian Jamasb | a****b@g****m | 94 |
| Anton Bushuiev | a****v@g****m | 14 |
| Unknown | d****w@p****e | 6 |
| AbdulHamid Merii | a****i@o****m | 5 |
| huginn | h****n@p****n | 4 |
| zehraacarsarica | z****9@g****m | 2 |
| Arian Jamasb | a****b@r****m | 1 |
| Erik Cederstrand | e****k@c****k | 1 |
| Giacomo Nunziati | 7****i | 1 |
| Grigorev Rostislav | 4****n | 1 |
| Kieran Didi | 5****i | 1 |
| Kristian Rother | k****r@a****u | 1 |
| Marcin Wojdyr | w****r@g****m | 1 |
| Ruibin Liu | r****8@g****m | 1 |
| braniii | d****l@p****m | 1 |
| tugceoruc | t****4@g****m | 1 |
Issue and Pull Request metadata
Last synced: 28 days ago
Total issues: 45
Total pull requests: 85
Average time to close issues: 9 months
Average time to close pull requests: 15 days
Total issue authors: 28
Total pull request authors: 18
Average comments per issue: 2.16
Average comments per pull request: 1.76
Merged pull request: 74
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: 2 minutes
Past year issue authors: 0
Past year pull request authors: 3
Past year average comments per issue: 0
Past year average comments per pull request: 1.33
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- rasbt (7)
- a-r-j (7)
- dominiquesydow (3)
- gate-tec (2)
- gezmi (2)
- mrauha (2)
- btyukodi (1)
- chendaniely (1)
- jaydeepsb (1)
- luc-j-bourhis (1)
- RMeli (1)
- Irlirion (1)
- chrischen1 (1)
- djberenberg (1)
- moorepants (1)
Top Pull Request Authors
- rasbt (40)
- a-r-j (21)
- kierandidi (4)
- gezmi (3)
- dominiquesydow (2)
- Irlirion (2)
- goniochromatic (2)
- braniii (1)
- SowmyaLR (1)
- ecederstrand (1)
- tugceoruc (1)
- anton-bushuiev (1)
- Ruibin-Liu (1)
- wojdyr (1)
- AH-Merii (1)
Top Issue Labels
- enhancement (12)
- bug (4)
- help wanted (2)
Top Pull Request Labels
Package metadata
- Total packages: 11
- Total downloads: unknown
- Total dependent packages: 3 (may contain duplicates)
- Total dependent repositories: 17 (may contain duplicates)
- Total versions: 55
- Total maintainers: 1
proxy.golang.org: github.com/BioPandas/biopandas
- Homepage:
- Documentation: https://pkg.go.dev/github.com/BioPandas/biopandas#section-documentation
- Licenses: bsd-3-clause
- Latest release: v0.5.1 (published almost 2 years ago)
- Last Synced: 2026-06-19T23:00:27.567Z (3 days ago)
- Versions: 18
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Stargazers count: 2.356%
- Forks count: 2.441%
- Average: 6.294%
- Dependent packages count: 9.576%
- Dependent repos count: 10.802%
proxy.golang.org: github.com/biopandas/biopandas
- Homepage:
- Documentation: https://pkg.go.dev/github.com/biopandas/biopandas#section-documentation
- Licenses: bsd-3-clause
- Latest release: v0.5.1 (published almost 2 years ago)
- Last Synced: 2026-06-19T23:00:22.879Z (3 days ago)
- Versions: 18
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Stargazers count: 2.356%
- Forks count: 2.469%
- Average: 6.301%
- Dependent packages count: 9.576%
- Dependent repos count: 10.802%
conda-forge.org: biopandas
BioPandas is a library for working with Protein Databank Files(PDB) written in Python 2.7 and Python 3.6.
- Homepage: http://github.com/BioPandas/biopandas
- Licenses: BSD-3-Clause
- Latest release: 0.4.1 (published about 4 years ago)
- Last Synced: 2026-04-01T03:22:18.190Z (3 months ago)
- Versions: 11
- Dependent Packages: 3
- Dependent Repositories: 17
-
Rankings:
- Dependent repos count: 8.628%
- Average: 14.403%
- Dependent packages count: 15.649%
- Stargazers count: 15.939%
- Forks count: 17.396%
nixpkgs-24.05: python311Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-24.05/pkgs/development/python-modules/biopandas/default.nix#L57
- Licenses: BSD-3-Clause
- Latest release: 0.5.0 (published 5 months ago)
- Last Synced: 2026-04-28T19:06:53.182Z (about 2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (1)
nixpkgs-24.11: python312Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-24.11/pkgs/development/python-modules/biopandas/default.nix#L50
- Licenses: BSD-3-Clause
- Latest release: 0.5.1 (published 5 months ago)
- Last Synced: 2026-03-07T15:14:03.803Z (4 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (1)
nixpkgs-23.11: python311Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-23.11/pkgs/development/python-modules/biopandas/default.nix#L56
- Licenses: BSD-3-Clause
- Latest release: 0.4.1 (published 5 months ago)
- Last Synced: 2026-03-07T09:39:14.100Z (4 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Maintainers (1)
nixpkgs-unstable: python314Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/development/python-modules/biopandas/default.nix#L50
- Licenses: BSD-3-Clause
- Latest release: 0.5.1 (published 5 months ago)
- Last Synced: 2026-03-05T10:08:47.453Z (4 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Maintainers (1)
nixpkgs-24.05: python312Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-24.05/pkgs/development/python-modules/biopandas/default.nix#L57
- Licenses: BSD-3-Clause
- Latest release: 0.5.0 (published 5 months ago)
- Last Synced: 2026-03-09T04:04:31.170Z (4 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (1)
nixpkgs-23.11: python310Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-23.11/pkgs/development/python-modules/biopandas/default.nix#L56
- Licenses: BSD-3-Clause
- Latest release: 0.4.1 (published 5 months ago)
- Last Synced: 2026-03-08T09:49:33.487Z (4 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (1)
nixpkgs-unstable: python313Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/development/python-modules/biopandas/default.nix#L50
- Licenses: BSD-3-Clause
- Latest release: 0.5.1 (published 5 months ago)
- Last Synced: 2026-03-06T23:43:13.981Z (4 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (1)
nixpkgs-24.11: python311Packages.biopandas
Working with molecular structures in pandas DataFrames
- Homepage: https://github.com/BioPandas/biopandas
- Documentation: https://github.com/NixOS/nixpkgs/blob/nixos-24.11/pkgs/development/python-modules/biopandas/default.nix#L50
- Licenses: BSD-3-Clause
- Latest release: 0.5.1 (published 5 months ago)
- Last Synced: 2026-04-19T10:58:37.784Z (2 months ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%
- Maintainers (1)
Dependencies
- numpy >=1.16.2
- pandas >=0.24.2