JOSS: https://github.com/sanger-pathogens/saffrontree
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Score: -Infinity
Last synced: about 3 hours ago
JSON representation
Repository metadata:
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
- Host: GitHub
- URL: https://github.com/sanger-pathogens/saffrontree
- Owner: sanger-pathogens
- License: other
- Created: 2017-02-25T21:29:48.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2020-06-11T09:15:45.000Z (about 6 years ago)
- Last Synced: 2026-04-13T14:02:24.959Z (2 months ago)
- Topics: bioinformatics, bioinformatics-pipeline, genomics, global-health, infectious-diseases, next-generation-sequencing, pathogen, research, sequencing
- Language: Python
- Homepage: https://sanger-pathogens.github.io/saffrontree/
- Size: 1.32 MB
- Stars: 25
- Watchers: 7
- Forks: 3
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG
- License: LICENSE
- Authors: AUTHORS
Owner metadata:
- Name: Pathogen Informatics, Wellcome Sanger Institute
- Login: sanger-pathogens
- Email:
- Kind: organization
- Description:
- Website: http://www.sanger.ac.uk/science/groups/pathogen-informatics
- Location: Hinxton, Cambs., UK
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/130803?v=4
- Repositories: 54
- Last Synced at: 2023-03-10T20:02:30.795Z
- Profile URL: https://github.com/sanger-pathogens
GitHub Events
Total
- Member event: 3
- Watch event: 1
- Total: 4
Last Year
- Total: 0
Committers metadata
Last synced: about 1 month ago
Total Commits: 51
Total Committers: 6
Avg Commits per committer: 8.5
Development Distribution Score (DDS): 0.196
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| andrewjpage | a****e@g****m | 41 |
| Sara Sjunnebo | s****4@s****k | 5 |
| Gareth Peat | g****6@s****k | 2 |
| Torsten Seemann | t****n | 1 |
| Sara Sjunnebo | s****o@g****m | 1 |
| Olivier Seret | 4****l | 1 |
Issue and Pull Request metadata
Last synced: 10 months ago
Total issues: 6
Total pull requests: 11
Average time to close issues: 3 days
Average time to close pull requests: 9 minutes
Total issue authors: 5
Total pull request authors: 4
Average comments per issue: 1.33
Average comments per pull request: 0.0
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- tseemann (2)
- karinedurand (1)
- EugeneBragin (1)
- LDoni (1)
- lpipes (1)
Top Pull Request Authors
- ssjunnebo (5)
- andrewjpage (4)
- garethpeat (1)
- tseemann (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 8
proxy.golang.org: github.com/sanger-pathogens/saffrontree
- Homepage:
- Documentation: https://pkg.go.dev/github.com/sanger-pathogens/saffrontree#section-documentation
- Licenses:
- Latest release: v0.1.2 (published over 9 years ago)
- Last Synced: 2026-05-18T07:01:52.011Z (about 1 month ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.943%
- Average: 5.109%
- Dependent repos count: 5.275%
Dependencies
- biopython *
- dendropy *
- pyfastaq *