JOSS: https://github.com/nhejazi/biotmle
bioconductor bioconductor-package bioconductor-packages bioinformatics biomarker-discovery biostatistics causal-inference computational-biology machine-learning r statistics targeted-learning
Score: 4.248495242049359
Last synced: about 22 hours ago
JSON representation
Repository metadata:
:package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery
- Host: GitHub
- URL: https://github.com/nhejazi/biotmle
- Owner: nhejazi
- License: other
- Created: 2016-08-16T21:26:06.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2026-07-27T18:05:37.000Z (26 days ago)
- Last Synced: 2026-07-27T20:07:43.950Z (26 days ago)
- Topics: bioconductor, bioconductor-package, bioconductor-packages, bioinformatics, biomarker-discovery, biostatistics, causal-inference, computational-biology, machine-learning, r, statistics, targeted-learning
- Language: R
- Homepage: https://codex.nimahejazi.org/biotmle/
- Size: 120 MB
- Stars: 5
- Watchers: 4
- Forks: 2
- Open Issues: 2
-
Metadata Files:
- Readme: README.Rmd
- Contributing: CONTRIBUTING.md
- License: LICENSE
Owner metadata:
- Name: nima hejazi
- Login: nhejazi
- Email:
- Kind: user
- Description: Assistant Professor of Biostatistics at the Harvard School of Public Health
- Website: https://nimahejazi.org
- Location: Boston, Massachusetts
- Twitter: nshejazi
- Company: Harvard Chan School of Public Health
- Icon url: https://avatars.githubusercontent.com/u/8527276?u=fc2c5b8054eb9619319a674feec845b864b600ce&v=4
- Repositories: 19
- Last Synced at: 2023-03-06T14:39:28.069Z
- Profile URL: https://github.com/nhejazi
GitHub Events
Total
- Push event: 1
- Watch event: 1
- Total: 2
Last Year
- Push event: 1
- Total: 1
Committers metadata
Last synced: 3 days ago
Total Commits: 311
Total Committers: 10
Avg Commits per committer: 31.1
Development Distribution Score (DDS): 0.132
Commits in past year: 12
Committers in past year: 2
Avg Commits per committer in past year: 6.0
Development Distribution Score (DDS) in past year: 0.333
| Name | Commits | |
|---|---|---|
| Nima Hejazi | n****h@n****g | 270 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y@s****u | 10 |
| A Wokaty | a****y@s****u | 6 |
| vobencha | v****a@g****m | 2 |
| Philippe Boileau | p****m@g****m | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| Herve Pages | h****s@f****g | 2 |
| Martin Morgan | m****n@f****g | 1 |
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 40
Total pull requests: 39
Average time to close issues: 3 months
Average time to close pull requests: 6 days
Total issue authors: 8
Total pull request authors: 2
Average comments per issue: 1.55
Average comments per pull request: 0.13
Merged pull request: 38
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: 2 days
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- nhejazi (31)
- dcpattie (3)
- wilsoncai1992 (1)
- HenrikBengtsson (1)
- PhilBoileau (1)
- courtneyschiffman (1)
- BiaoLiu2017 (1)
- karthik (1)
Top Pull Request Authors
- nhejazi (38)
- PhilBoileau (1)
Top Issue Labels
- enhancement (15)
- bug (12)
- question (6)
- TODO (5)
- feature request (3)
- wontfix (2)
- help wanted (1)
Top Pull Request Labels
- enhancement (10)
- bug (3)
- feature request (1)
Dependencies
- R >= 4.0 depends
- BiocGenerics * imports
- BiocParallel * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- assertthat * imports
- dplyr * imports
- drtmle >= 1.0.4 imports
- ggplot2 * imports
- ggsci * imports
- limma * imports
- methods * imports
- stats * imports
- superheat * imports
- tibble * imports
- BiocStyle * suggests
- DBI * suggests
- Matrix * suggests
- SuperLearner * suggests
- arm * suggests
- biotmleData >= 1.1.1 suggests
- earth * suggests
- knitr * suggests
- ranger * suggests
- rmarkdown * suggests
- testthat * suggests