{"id":359005,"url":"https://github.com/nhejazi/biotmle","last_synced_at":"2026-08-22T07:30:17.529Z","repository":{"id":54761983,"uuid":"65854775","full_name":"nhejazi/biotmle","owner":"nhejazi","description":":package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery","archived":false,"fork":false,"pushed_at":"2026-07-27T18:05:37.000Z","size":125716,"stargazers_count":5,"open_issues_count":2,"forks_count":2,"subscribers_count":4,"default_branch":"master","last_synced_at":"2026-07-27T20:07:43.950Z","etag":null,"topics":["bioconductor","bioconductor-package","bioconductor-packages","bioinformatics","biomarker-discovery","biostatistics","causal-inference","computational-biology","machine-learning","r","statistics","targeted-learning"],"latest_commit_sha":null,"homepage":"https://codex.nimahejazi.org/biotmle/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nhejazi.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2016-08-16T21:26:06.000Z","updated_at":"2026-07-27T18:06:07.000Z","dependencies_parsed_at":"2022-08-14T02:01:02.990Z","dependency_job_id":null,"html_url":"https://github.com/nhejazi/biotmle","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/nhejazi/biotmle","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nhejazi","download_url":"https://codeload.github.com/nhejazi/biotmle/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":36088336,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-07-20T02:08:10.276Z","status":"online","status_checked_at":"2026-07-30T02:00:05.956Z","response_time":106,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nhejazi","name":"nima hejazi","uuid":"8527276","kind":"user","description":"Assistant Professor of Biostatistics at the Harvard School of Public Health","email":"","website":"https://nimahejazi.org","location":"Boston, Massachusetts","twitter":"nshejazi","company":"Harvard Chan School of Public Health","icon_url":"https://avatars.githubusercontent.com/u/8527276?u=fc2c5b8054eb9619319a674feec845b864b600ce\u0026v=4","repositories_count":19,"last_synced_at":"2023-03-06T14:39:28.069Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nhejazi","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T16:53:40.433Z","updated_at":"2023-03-06T14:39:28.072Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nhejazi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nhejazi/repositories"},"packages":[],"commits":{"id":7724924,"full_name":"nhejazi/biotmle","default_branch":"master","total_commits":311,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":31.1,"dds":0.13183279742765275,"past_year_total_commits":12,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":6.0,"past_year_dds":0.33333333333333337,"last_synced_at":"2026-08-20T06:30:43.719Z","last_synced_commit":"e86a3da16d1cbd076c0f1aac44b412044f9601c2","created_at":"2024-12-16T20:31:04.102Z","updated_at":"2026-08-20T06:30:42.922Z","committers":[{"name":"Nima Hejazi","email":"nh@nimahejazi.org","login":"nhejazi","count":270},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":10},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":6},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"Philippe Boileau","email":"pboileau.swim@gmail.com","login":"PhilBoileau","count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1}],"past_year_committers":[{"name":"Nima Hejazi","email":"nh@nimahejazi.org","login":"nhejazi","count":8},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":4}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-08-21T00:00:17.498Z","repositories_count":6767814,"commits_count":980893961,"contributors_count":41356474,"owners_count":1362673,"committers_count":3357101,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"nhejazi/biotmle","html_url":"https://github.com/nhejazi/biotmle","last_synced_at":"2026-08-21T07:00:31.034Z","status":null,"issues_count":40,"pull_requests_count":39,"avg_time_to_close_issue":7365871.578947368,"avg_time_to_close_pull_request":497451.3333333333,"issues_closed_count":38,"pull_requests_closed_count":39,"pull_request_authors_count":2,"issue_authors_count":8,"avg_comments_per_issue":1.55,"avg_comments_per_pull_request":0.1282051282051282,"merged_pull_requests_count":38,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":180994.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2024-12-16T20:31:07.802Z","updated_at":"2026-08-21T07:00:31.034Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nhejazi%2Fbiotmle/issues","issue_labels_count":{"table":{"enhancement":15,"bug":12,"question":6,"TODO":5,"feature request":3,"wontfix":2,"help wanted":1}},"pull_request_labels_count":{"table":{"enhancement":10,"bug":3,"feature request":1}},"issue_author_associations_count":{"table":{"OWNER":31,"NONE":8,"COLLABORATOR":1}},"pull_request_author_associations_count":{"table":{"OWNER":38,"COLLABORATOR":1}},"issue_authors":{"table":{"nhejazi":31,"dcpattie":3,"wilsoncai1992":1,"HenrikBengtsson":1,"PhilBoileau":1,"courtneyschiffman":1,"BiaoLiu2017":1,"karthik":1}},"pull_request_authors":{"table":{"nhejazi":38,"PhilBoileau":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-08-22T00:00:08.916Z","repositories_count":16227029,"issues_count":41911461,"pull_requests_count":133595637,"authors_count":11493031,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{"OWNER":1}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{"nhejazi":1}},"maintainers":[{"table":{"login":"nhejazi","count":69,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nhejazi"}},{"table":{"login":"PhilBoileau","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/PhilBoileau"}}],"active_maintainers":[{"table":{"login":"nhejazi","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nhejazi"}}]}},"events":{"total":{"WatchEvent":1,"PushEvent":1},"last_year":{"PushEvent":1}},"keywords":["bioconductor","bioconductor-package","bioconductor-packages","bioinformatics","biomarker-discovery","biostatistics","causal-inference","computational-biology","machine-learning","r","statistics","targeted-learning"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-14T02:01:02.881Z","updated_at":"2022-08-14T02:01:02.881Z","repository_link":"https://github.com/nhejazi/biotmle/blob/master/DESCRIPTION","dependencies":[{"id":1497290112,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":1497290113,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290114,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290115,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290116,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290117,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290118,"package_name":"ggsci","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290119,"package_name":"superheat","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290120,"package_name":"assertthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290121,"package_name":"drtmle","ecosystem":"cran","requirements":"\u003e= 1.0.4","direct":true,"kind":"imports","optional":false},{"id":1497290122,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290123,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290124,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290125,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290126,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1497290127,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290128,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290129,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290130,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290131,"package_name":"arm","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290132,"package_name":"earth","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290133,"package_name":"ranger","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290134,"package_name":"SuperLearner","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290135,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290136,"package_name":"DBI","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1497290137,"package_name":"biotmleData","ecosystem":"cran","requirements":"\u003e= 1.1.1","direct":true,"kind":"suggests","optional":false}]}],"score":4.248495242049359,"created_at":"2025-04-11T10:24:31.268Z","updated_at":"2026-08-22T07:30:17.529Z","avatar_url":"https://github.com/nhejazi.png","language":"R","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/359005","html_url":"https://summary.ecosyste.ms/projects/359005"}