Collections: JOSS
https://github.com/MREYE-LUMC/ZOSPy
Wrapper around the Zemax OpticStudio API. Provides a more pythonic and intuitive way to interact with the ZOS-API through python using a .NET connection.
optics optics-simulation opticstudio python zemax zos-api
Last synced: 14 Aug 2026
https://github.com/ConorMacBride/mcalf
MCALF: Multi-Component Atmospheric Line Fitting
astronomy python solar solar-physics sun
Last synced: 14 Aug 2026
https://github.com/jorgensd/adios4dolfinx
Extending DOLFINx with checkpointing functionality
adios2 checkpointing fenicsx mpi-applications
Last synced: 14 Aug 2026
https://github.com/mattpitkin/psrqpy
A python module to query the ATNF pulsar catalogue
atnf catalogue pulsar python
Last synced: 14 Aug 2026
https://github.com/isce-framework/dolphin
InSAR phase linking library for creating surface displacement maps using persistent scatterer (PS) and distributed scatterer (DS) processing
deformation geoscience geospatial-processing insar phase-linking remote-sensing squeesar time-series
Last synced: 14 Aug 2026
https://github.com/fabian-sp/GGLasso
A Python package for General Graphical Lasso computation
graphical-lasso graphical-models latent-variable-models network-inference optimization
Last synced: 14 Aug 2026
https://github.com/SNEWS2/snewpy
A Python package for working with supernova neutrinos
Last synced: 14 Aug 2026
https://github.com/handley-lab/fgivenx
Functional Posterior Plotter
astrophysics astrostatistics bayesian-inference cosmology matplotlib plotting statistics
Last synced: 14 Aug 2026
https://github.com/RAMP-project/RAMP
Repository of the open-source RAMP model for generating multi-energy loads profiles
Last synced: 13 Aug 2026
https://github.com/ropensci/aorsf
Accelerated Oblique Random Survival Forests
data-science oblique random-forest rstats survival
Last synced: 14 Aug 2026
https://github.com/PhilBoileau/scPCA
A toolbox for sparse contrastive principal component analysis
bioconductor contrastive-learning dimensionality-reduction
Last synced: 14 Aug 2026
https://github.com/pboesu/rucrdtw
R Bindings for the UCR Suite for fast time series subsequence search
Last synced: 14 Aug 2026
https://github.com/betteridiot/bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
Last synced: 14 Aug 2026
https://github.com/JuliaHEP/UnROOT.jl
Native Julia I/O package to work with CERN ROOT files objects (TTree and RNTuple)
cern-root hacktober hep high-energy-physics julia particle-physics
Last synced: 14 Aug 2026
https://github.com/mcdc-project/mcdc
MC/DC: Monte Carlo Dynamic Code
high-performance-computing monte-carlo monte-carlo-simulation neutron-transport nuclear-engineering numba particle-transport python radiation-transport
Last synced: 13 Aug 2026
https://github.com/EducationalTestingService/rsmtool
A Python package to facilitate research on building and evaluating automated scoring models.
automated-scoring-engines fairness hacktoberfest python scikit-learn scoring-models visualization
Last synced: 14 Aug 2026
https://github.com/brocklab/pycashier
cash in on DNA barcode tags
bioinformatics pipeline
Last synced: 14 Aug 2026
https://github.com/ahudde/greeks
Sensitivities of Prices of Financial Options and Implied Volatilites
asian-option greeks implied-volatility option r-package
Last synced: 13 Aug 2026
https://github.com/engnadeau/pybotics
The Python Toolbox for Robotics
calibration doi dynamics hacktoberfest impedance-control inverse-kinematics kinematics math mathematics numpy pypi python python-toolbox research robot robotics scipy trajectory
Last synced: 14 Aug 2026
https://github.com/ejhigson/nestcheck
Error analysis, diagnostic tests and plots for nested sampling calculations.
bayesian-inference dynamic-nested-sampling error-analysis nested-sampling python sampling-error
Last synced: 14 Aug 2026
https://github.com/bjodah/pyneqsys
Solve symbolically defined systems of non-linear equations numerically.
least-squares nonlinear-equations root-finding symbolic-manipulation sympy
Last synced: 14 Aug 2026
https://github.com/danielenricocahall/elephas
Distributed Deep learning with Keras & Spark
Last synced: 14 Aug 2026
https://github.com/python-hydro/pyro2
A framework for hydrodynamics explorations and prototyping
advection astrophysical-simulation finite-volume finite-volume-methods hydrodynamics multigrid pde pyro python simulation solver
Last synced: 14 Aug 2026
https://github.com/martinlackner/abcvoting
Python implementations of approval-based committee (multi-winner) voting rules
approval-voting committee computational-social-choice multiwinnervoting python research social-choice social-choice-theory voting voting-methods
Last synced: 14 Aug 2026
https://github.com/tum-pbs/PhiML
Intuitive scientific computing with dimension types for Jax, PyTorch, TensorFlow & NumPy
Last synced: 13 Aug 2026
https://github.com/AstraZeneca/kallisto
Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.
chemistry computational-chemistry machinelearning quantum-chemistry
Last synced: 14 Aug 2026
https://github.com/grf-labs/policytree
Policy learning via doubly robust empirical welfare maximization over trees
causal-inference policy-learning
Last synced: 14 Aug 2026
https://github.com/ropensci/UCSCXenaTools
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
api-client bioinformatics ccle downloader icgc r tcga toil treehouse ucsc ucsc-xena
Last synced: 14 Aug 2026
https://github.com/ornlneutronimaging/braggedgemodeling
Model and analyze neutron Bragg-edge imaging spectra
bragg-edge neutron
Last synced: 14 Aug 2026
https://github.com/schochastics/netrankr
An R package for network centrality
network-analysis network-centrality r-package
Last synced: 14 Aug 2026
https://github.com/dazhwu/pydynpd
This python package estimates dynamic panel data model using difference GMM and system GMM.
arellano-bond data dynamic dynamic-panel-data panel system-gmm
Last synced: 14 Aug 2026
https://github.com/ECSIM/opem
OPEM (Open Source PEM Fuel Cell Simulation Tool)
chemistry dynamic-analysis electrochemistry fuel-cell opem pem physics physics-simulation python script simulation simulator static-analysis static-analyzer
Last synced: 14 Aug 2026
https://github.com/delira-dev/delira
Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow
deep-learning delira machine-learning medical-images medical-imaging pytorch radiology tensorflow
Last synced: 14 Aug 2026
https://github.com/ImperialCollegeLondon/sharpy
Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code
aeroelasticity aeronautics simulation structural-dynamics structures wind-turbines
Last synced: 14 Aug 2026
https://github.com/cjbarrie/academictwitteR
Repo for academictwitteR package to query the Twitter Academic Research Product Track v2 API endpoint.
r r-package twitter twitter-api
Last synced: 14 Aug 2026
https://github.com/Eden-Kramer-Lab/spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
brain-connectivity canonical-coherence coherence connectivity-measures electrophysiology frequency-domain global-coherence multitaper neuroscience phase-lag-index python spectral-granger-causality spectrogram
Last synced: 13 Aug 2026
https://github.com/nasa/prog_models
The NASA Prognostic Model Package is a Python framework focused on defining and building models for prognostics (computation of remaining useful life) of engineering systems, and provides a set of prognostics models for select components developed within this framework, suitable for use in prognostics applications for these components.
modeling prognostic-models prognostics prognostics-health-management simulation
Last synced: 13 Aug 2026
https://github.com/mad-lab-fau/BioPsyKit
A Python package for the analysis of biopsychological data.
acute-stress amylase biomarkers biosignals cortisol ecg-processing health-psychology psychology python questionnaires statistics stress-protocols
Last synced: 14 Aug 2026
https://github.com/underworldcode/underworld2
underworld2: A parallel, particle-in-cell, finite element code for Geodynamics.
auscope docker finite-element-methods geodynamics hacktoberfest hacktoberfest2020 hacktoberfest2021 particle-in-cell petsc python underworld
Last synced: 14 Aug 2026
https://github.com/TheHPXProject/hpx
The C++ Standard Library for Parallelism and Concurrency
c-plus-plus concurrency cpp20 cpp20-modules cross-platform distributed parallelism
Last synced: 14 Aug 2026
https://github.com/SchlossLab/mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines
machine-learning r-package rstats
Last synced: 14 Aug 2026
https://github.com/actris-cloudnet/cloudnetpy
Python package for Cloudnet data processing
Last synced: 14 Aug 2026
https://github.com/MathEXLab/PySPOD
A Python package for spectral proper orthogonal decomposition (SPOD).
coherent-structures data-mining dynamical-systems spod
Last synced: 14 Aug 2026
https://github.com/Ciela-Institute/caustics
A gravitational lensing simulator for the machine learning era.
gravitational-lensing pytorch
Last synced: 14 Aug 2026
https://github.com/artefactory/choice-learn
Discrete choice modeling in Python with large datasets & single choice / basket models - Assortment & Pricing Optimization .
assortment choice choice-model choice-modeling conditional-logit-model deep discrete-choice-models gurobi learning machine ml model multinomial-logit neural-networks optimization or-tools pricing research-center rum tensorflow
Last synced: 14 Aug 2026
https://github.com/watts-dev/watts
Workflow and Template Toolkit for Simulation (WATTS)
mcnp nuclear-energy openmc python simulation templates workflow-automation
Last synced: 14 Aug 2026
https://github.com/CederGroupHub/smol
Statistical Mechanics on Lattices
cluster-expansion ising-model lattice-gas materials-science monte-carlo statistical-mechanics
Last synced: 14 Aug 2026
https://github.com/florisvb/PyNumDiff
Methods for numerical differentiation of noisy data in python
Last synced: 14 Aug 2026
https://github.com/trixi-framework/TrixiParticles.jl
TrixiParticles.jl: Particle-based multiphysics simulations in Julia
julia multiphysics simulation smoothed-particle-hydrodynamics sph
Last synced: 14 Aug 2026
https://github.com/paucablop/chemotools
The scikit-learn-native foundation package for chemometrics 🧪 🤖
artificial-intelligence autoencoders chemometrics deep-learning hacktoberfest ir-spectroscopy machine-learning multivariate-analysis nir-spectroscopy python raman-spectroscopy scikit-learn sklearn spectra spectroscopy
Last synced: 14 Aug 2026
https://github.com/steven-murray/powerbox
A python package for making arbitrarily structured, arbitrary-dimension boxes
Last synced: 14 Aug 2026
https://github.com/ropensci/stats19
R package for working with open road traffic casualty data from Great Britain
r r-package rstats
Last synced: 14 Aug 2026
https://github.com/oekosheri/GB_code
A grain boundary generation code
crystallography grain-boundaries high-throughput-computing linear-algebra python
Last synced: 14 Aug 2026
https://github.com/neuropsychology/psycho.R
An R package for experimental psychologists
apa apa6 bayesian correlation format interpretation mixed-models neuroscience psycho psychology r rstanarm statistics
Last synced: 14 Aug 2026
https://gitlab.com/jesseds/apav
APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and visualization of atom probe tomography experiments.
Atom Probe Field Evaporation data analysis science tomography
Last synced: 14 Aug 2026
https://github.com/pybamm-team/liionpack
A battery pack simulation tool that uses the PyBaMM framework
Last synced: 14 Aug 2026
https://github.com/dynamicslab/pykoopman
A package for computing data-driven approximations to the Koopman operator.
Last synced: 13 Aug 2026
https://github.com/miykael/atlasreader
Python interface for generating coordinate tables and region labels from statistical MRI images
Last synced: 14 Aug 2026
https://github.com/copasi/basico
A simplified python interface to COPASI.
copasi python
Last synced: 14 Aug 2026
https://github.com/CSBiology/FSharpGephiStreamer
F# functions for streaming any kind of graph/network data to the network visualization tool gephi
data-analysis exploratory-data-analysis fsharp gephi graph-visualization streaming-graph-data visualization
Last synced: 14 Aug 2026
https://github.com/johentsch/ms3
A parser for annotated MuseScore 3 files.
corpus corpus-data corpus-generator corpus-processing corpus-tools musescore musescore2 musescore3 musescore4 music-score music-scores parser sheet-music sheet-music-parser tsv tsv-files tsv-format xml-parser xml-parser-library xml-parsing
Last synced: 14 Aug 2026
https://github.com/thepetabyteproject/your
Your Unified Reader
fast-radio-bursts filterbank psrdada psrdada-python psrfits pulsars python
Last synced: 14 Aug 2026
https://github.com/jbytecode/JMcDM
A package for Multiple criteria decision-making techniques in Julia
julia mcdm multiple-criteria-decision-making optimization
Last synced: 14 Aug 2026
https://github.com/ropensci/lightr
Import spectral data and related metadata in R
file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy
Last synced: 14 Aug 2026
https://github.com/jfowkes/pycutest
Python interface to CUTEst
optimization-tools
Last synced: 14 Aug 2026
https://github.com/ropensci/phylogram
Dendrograms for Evolutionary Analysis
peer-reviewed r r-package rstats
Last synced: 14 Aug 2026
https://github.com/pyroll-project/pyroll-core
PyRoll rolling simulation framework - core library.
groove-rolling materials metal-forming pyroll python rolling simulation
Last synced: 14 Aug 2026
https://github.com/opengeos/lidar
A Python package for delineating nested surface depressions from digital elevation data.
digital-elevation-model gis hydrological image-processing lidar python remote-sensing terrain-analysis
Last synced: 14 Aug 2026
https://github.com/pyro-kinetics/pyrokinetics
Python library to run and analyse gyrokinetics simulations
Last synced: 14 Aug 2026
https://github.com/bcgov/ssdtools
An R package to fit and plot Species Sensitivity Distributions (SSDs)
ecotoxicology env rstats species-sensitivity-distribution
Last synced: 13 Aug 2026
https://github.com/seisman/HinetPy
A Python package for accessing and processing NIED Hi-net seismic data.
hinet python sac seismology win32
Last synced: 14 Aug 2026
https://github.com/CliMA/CalibrateEmulateSample.jl
Stochastic Optimization, Learning, Uncertainty and Sampling
Last synced: 13 Aug 2026
https://github.com/FAU-LAP/NOMAD-CAMELS
We are developing a configurable measurement software (CAMELS), targeted towards the requirements of experimental solid-state physics. Here many experiments utilize a multitude of measurement devices used in dynamically changing setups.
Last synced: 14 Aug 2026
https://github.com/ElektraInitiative/libelektra
Elektra serves as a universal and secure framework to access configuration settings in a global, hierarchical key database.
administrator c c-plus-plus configuration configuration-files configuration-management configuration-parser elektra key-database
Last synced: 14 Aug 2026
https://github.com/MLMI2-CSSI/foundry
Simplifying the discovery and usage of machine-learning ready datasets in materials science and chemistry
chemistry data-science datasets machine-learning materials-science
Last synced: 13 Aug 2026
https://github.com/arives/rr2
R2 for correlated data; see https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syy060/5098616
Last synced: 14 Aug 2026
https://github.com/firefly-cpp/NiaARM
A minimalistic framework for Numerical Association Rule Mining
association-rule-mining association-rules data-mining data-science evolutionary-algorithms swarm-intelligence
Last synced: 14 Aug 2026
https://gitlab.com/utopia-project/dantro
dantro is a python package for handling, transforming, and visualizing hierarchically organized data. Integrated into data-intensive projects, it supplies an easy way to define a customizable, configuration-based data processing pipeline. See [utopya](https://gitlab.com/utopia-project/utopya) for an example.
data processing pipeline h5py matplotlib numpy python utopia-project xarray yaml
Last synced: 13 Aug 2026
https://github.com/ghislainv/forestatrisk
📦🐍 Python package to model and forecast the risk of deforestation
biodiversity-scenario co2-emissions deforestation deforestation-risk forecasting forest-cover-change ipbes ipcc land-use-change protected-areas python redd roads spatial-analysis spatial-autocorrelation spatial-modelling tropical-forests
Last synced: 14 Aug 2026
https://github.com/DavidLapous/multipers
Python library for multiparameter persistence
cpp cython icml-2024 multiparameter-persistence neurips-2023 persistent-homology python tda topological-data-analysis
Last synced: 13 Aug 2026
https://github.com/MintonGroup/swiftest
Swiftest is a software packaged designed to model the long-term dynamical dynamics of n-body systems with a dominant central body, like the solar system.
Last synced: 14 Aug 2026
https://github.com/ModelOriented/modelStudio
📍 Interactive Studio for Explanatory Model Analysis
ai explainable explainable-ai explainable-machine-learning explanatory-model-analysis human iml interactive interactivity interpretability interpretable interpretable-machine-learning learning machine model model-visualization r visualization xai
Last synced: 14 Aug 2026
https://github.com/openpharma/rbmi
Reference based multiple imputation R package
Last synced: 14 Aug 2026
https://github.com/minaskar/pocomc
pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation
astronomy astrophysics bayesian-inference black-box-bayesian-inference cosmology cosmology-inference general-purpose inference machine-learning mcmc mcmc-sampler normalizing-flows probabilistic-data-analysis python sampling sampling-methods smc
Last synced: 14 Aug 2026
https://github.com/floodlight-sports/floodlight
Python package for streamlined analysis of sports data.
python sports-analytics sports-stats
Last synced: 14 Aug 2026
https://github.com/PRIDE-Archive/pridepy
Python client for PRIDE Archive Rest API.
mass-spectrometry pride pride-database proteomics python python-client
Last synced: 13 Aug 2026
https://github.com/lrnv/cort
Classes and Tools For Some Empirical and Non-parametrical Copula Models.
Last synced: 14 Aug 2026
https://github.com/NKI-AI/direct
Deep learning framework for MRI reconstruction
deep-learning fastmri-challenge inverse-problems medical-imaging mri-reconstruction pytorch
Last synced: 14 Aug 2026
https://github.com/mikahama/uralicNLP
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
clustering conll-u constraint-grammar dutch finnish french fst german large-language-model lemmatizer llm moksha morphological-analysis morphological-generation nlp-library russian sami spanish swedish uralic-languages
Last synced: 14 Aug 2026
https://github.com/singularityhub/singularity-hpc
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
containers hpc lmod reproducibility singularity
Last synced: 14 Aug 2026
https://github.com/gboeing/osmnx/
Download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.
geography geospatial gis mapping networks networkx openstreetmap osm osmnx overpass-api python routing spatial spatial-analysis spatial-data street-networks transport transportation urban urban-planning
Last synced: 14 Aug 2026
https://github.com/highamm/sptotal
Package for Fitting Spatial Linear Models and Predicting Total Abundances for Finite Populations
Last synced: 14 Aug 2026
https://github.com/CLARIAH/grlc
grlc builds Web APIs using shared SPARQL queries
api linked-data linked-data-api open-api semantic-web sparql swagger-ui
Last synced: 14 Aug 2026
https://github.com/MFaymon/spINAR
Semiparametric and parametric estimation and bootstrapping of integer-valued autoregressive (INAR) models.
bootstrapping count-data parametric-estimation penalization semiparametric-estimation simulation time-series validation
Last synced: 13 Aug 2026
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