UCSCXenaTools

api-client bioinformatics ccle downloader icgc r tcga toil treehouse ucsc ucsc-xena

Score: 13.827873816947672

Last synced: about 10 hours ago
JSON representation

Repository metadata:

:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

Host: GitHub
URL: https://github.com/ropensci/UCSCXenaTools
Owner: ropensci
License: gpl-3.0
Created: 2019-03-31T08:39:37.000Z (over 7 years ago)
Default Branch: master
Last Pushed: 2026-05-05T10:34:46.000Z (5 months ago)
Last Synced: 2026-09-06T22:22:44.114Z (23 days ago)
Topics: api-client, bioinformatics, ccle, downloader, icgc, r, tcga, toil, treehouse, ucsc, ucsc-xena
Language: R
Homepage: https://docs.ropensci.org/UCSCXenaTools
Size: 3.03 MB
Stars: 117
Watchers: 3
Forks: 14
Open Issues: 1
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE.md

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description: Tools and R Packages for Open Science
Website: https://ropensci.org/
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 377
Last Synced at: 2026-09-24T17:51:10.680Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Create event: 1
Fork event: 2
Issue comment event: 23
Issues event: 14
Push event: 11
Release event: 1
Watch event: 12
Total: 64

Last Year

Issue comment event: 4
Issues event: 3
Push event: 1
Watch event: 4
Total: 12

Committers metadata

Last synced: 1 day ago

Total Commits: 279
Total Committers: 4
Avg Commits per committer: 69.75
Development Distribution Score (DDS): 0.022

Commits in past year: 4
Committers in past year: 1
Avg Commits per committer in past year: 4.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
ShixiangWang	w**x@s**n	273
Martin Morgan	m**n@f**g	3
Shixiang Wang (王诗翔)	w**g@i**m	2
rOpenSci Bot	m**t@g**m	1

Issue and Pull Request metadata

Last synced: 1 day ago

Total issues: 52
Total pull requests: 0
Average time to close issues: about 1 month
Average time to close pull requests: N/A
Total issue authors: 18
Total pull request authors: 0
Average comments per issue: 1.73
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0

Past year issues: 3
Past year pull requests: 0
Past year average time to close issues: 23 days
Past year average time to close pull requests: N/A
Past year issue authors: 3
Past year pull request authors: 0
Past year average comments per issue: 3.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ropensci/UCSCXenaTools

Top Issue Authors

ShixiangWang (34)
maelle (2)
ayueme (1)
markgene (1)
gbregni (1)
danshu (1)
vuzun (1)
Amhaslam (1)
PanSX-Dr (1)
ghost (1)
adomingues (1)
sckott (1)
jianguozhouzunyimedicaluniversity (1)
Shiywa (1)
jbagnot (1)

Top Pull Request Authors

Top Issue Labels

enhancement (10)
bug (7)
more-info-needed (6)
help wanted (4)
data-source-update (3)
good first issue (2)
plan (2)
invalid (1)
question (1)

Top Pull Request Labels

Package metadata

Total packages: 3
Total downloads:
- cran: 1,610 last-month
Total docker downloads: 524
Total dependent packages: 2 (may contain duplicates)
Total dependent repositories: 6 (may contain duplicates)
Total versions: 85
Total maintainers: 1

proxy.golang.org: github.com/ropensci/UCSCXenaTools

Homepage:
Documentation: https://pkg.go.dev/github.com/ropensci/UCSCXenaTools#section-documentation
Licenses: gpl-3.0
Latest release: v1.7.0 (published 8 months ago)
Last Synced: 2026-09-28T19:04:51.274Z (1 day ago)
Versions: 24
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.765%
- Average: 4.926%
- Dependent repos count: 5.086%

proxy.golang.org: github.com/ropensci/ucscxenatools

Homepage:
Documentation: https://pkg.go.dev/github.com/ropensci/ucscxenatools#section-documentation
Licenses: gpl-3.0
Latest release: v1.7.0 (published 8 months ago)
Last Synced: 2026-09-28T19:04:50.992Z (1 day ago)
Versions: 24
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 4.827%
- Average: 4.99%
- Dependent repos count: 5.152%

cran.r-project.org: UCSCXenaTools

Download and Explore Datasets from UCSC Xena Data Hubs

Homepage: https://docs.ropensci.org/UCSCXenaTools/
Documentation: http://cran.r-project.org/web/packages/UCSCXenaTools/UCSCXenaTools.pdf
Licenses: GPL-3
Latest release: 1.7.0 (published 8 months ago)
Last Synced: 2026-09-28T19:04:47.484Z (1 day ago)
Versions: 37
Dependent Packages: 2
Dependent Repositories: 6
Downloads: 1,610 Last month
Docker Downloads: 524
Rankings:
- Stargazers count: 4.102%
- Forks count: 5.8%
- Average: 11.423%
- Dependent repos count: 11.892%
- Dependent packages count: 13.638%
- Docker downloads count: 16.478%
- Downloads: 16.629%
Maintainers (1)
- w_shixiang@163.com

Dependencies

DESCRIPTION cran

R >= 3.5 depends
digest * imports
dplyr * imports
httr * imports
jsonlite * imports
magrittr * imports
methods * imports
readr * imports
rlang * imports
utils * imports
covr * suggests
knitr * suggests
prettydoc * suggests
rmarkdown * suggests
testthat >= 2.1.0 suggests

.github/workflows/main.yml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/greetings.yml actions

actions/first-interaction v1 composite

ecosyste.ms

Data

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Summary