phylogram

peer-reviewed r r-package rstats

Score: 13.418192174991878

Last synced: about 6 hours ago
JSON representation

Repository metadata:

Dendrograms for Evolutionary Analysis

Host: GitHub
URL: https://github.com/ropensci/phylogram
Owner: ropensci
Created: 2017-01-17T02:07:39.000Z (over 9 years ago)
Default Branch: master
Last Pushed: 2019-12-09T21:21:54.000Z (over 6 years ago)
Last Synced: 2026-06-07T18:04:15.444Z (16 days ago)
Topics: peer-reviewed, r, r-package, rstats
Language: R
Homepage: https://docs.ropensci.org/phylogram
Size: 939 KB
Stars: 12
Watchers: 6
Forks: 3
Open Issues: 3
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: .github/CONTRIBUTING.md
- Codemeta: codemeta.json

CodeMeta metadata:

@context:
- https://doi.org/10.5063/schema/codemeta-2.0
- http://schema.org
@type: SoftwareSourceCode
Identifier: phylogram
Description: Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) ), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.
Name: phylogram: Dendrograms for Evolutionary Analysis
Code repository: http://github.com/ropensci/phylogram
Issue tracker: http://github.com/ropensci/phylogram/issues
License: https://spdx.org/licenses/GPL-3.0
Version: 2.1.0.9000
Programming language:
- @type: ComputerLanguage
- Name: R
- Version: 3.4.4
- Url: https://r-project.org
Runtime platform: R version 3.4.4 (2018-03-15)
Provider:
- @id: https://cran.r-project.org
- @type: Organization
- Name: Comprehensive R Archive Network (CRAN)
- Url: https://cran.r-project.org
Author:
- - @type: Person
  - Given name: Shaun
  - Family name: Wilkinson
  - Email: shaunpwilkinson@gmail.com
  - @id: https://orcid.org/0000-0002-7332-7931
- - @type: Person
  - Given name: Simon
  - Family name: Davy
  - Email: simon.davy@vuw.ac.nz
  - @id: https://orcid.org/0000-0003-3584-5356
Maintainer:
- - @type: Person
  - Given name: Shaun
  - Family name: Wilkinson
  - Email: shaunpwilkinson@gmail.com
  - @id: https://orcid.org/0000-0002-7332-7931
Software suggestions:
- - @type: SoftwareApplication
  - Identifier: dendextend
  - Name: dendextend
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=dendextend
- - @type: SoftwareApplication
  - Identifier: knitr
  - Name: knitr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=knitr
- - @type: SoftwareApplication
  - Identifier: rmarkdown
  - Name: rmarkdown
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rmarkdown
- - @type: SoftwareApplication
  - Identifier: testthat
  - Name: testthat
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=testthat
Software requirements:
- - @type: SoftwareApplication
  - Identifier: ape
  - Name: ape
  - Version: >= 4.0
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=ape
- - @type: SoftwareApplication
  - Identifier: methods
  - Name: methods
- - @type: SoftwareApplication
  - Identifier: stats
  - Name: stats
Release notes: https://github.com/ropensci/phylogram/blob/master/NEWS.md
Readme: https://github.com/ropensci/phylogram/blob/master/README.md
File size: 264.537KB
Cont integration:
- https://travis-ci.org/shaunpwilkinson/phylogram
- https://codecov.io/github/shaunpwilkinson/phylogram
Development status: http://www.repostatus.org/#active
Citation:
- - @type: SoftwareSourceCode
  - Date published: 2018
  - Author:
    - - @type: Person
      - Given name:
        Shaun
        P.
      - Family name: Wilkinson
    - - @type: Person
      - Given name:
        Simon
        K.
      - Family name: Davy
  - Name: {phylogram}: an R package for phylogenetic analysis with nested lists
  - Identifier: 10.21105/joss.00790
  - Url: http://joss.theoj.org/papers/10.21105/joss.00790
  - Paginiation: 790
  - @id: https://doi.org/10.21105/joss.00790
  - Same as: https://doi.org/10.21105/joss.00790
  - Is part of:
    - @type: PublicationIssue
    - Date published: 2018
    - Is part of:
      - @type:
        PublicationVolume
        Periodical
      - Volume number: 3
      - Name: Journal of Open Source Software
Related link: https://CRAN.R-project.org/package=phylogram

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description:
Website: https://ropensci.org/
Location: Berkeley, CA
Twitter: rOpenSci
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 307
Last Synced at: 2023-03-10T20:30:59.242Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Total: 0

Last Year

Total: 0

Committers metadata

Last synced: 5 days ago

Total Commits: 86
Total Committers: 2
Avg Commits per committer: 43.0
Development Distribution Score (DDS): 0.012

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
shaunpwilkinson	s**n@g**m	85
rOpenSci Bot	m**t@g**m	1

Issue and Pull Request metadata

Last synced: 18 days ago

Total issues: 3
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 3
Total pull request authors: 0
Average comments per issue: 0.33
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ropensci/phylogram

Top Issue Authors

sekhwal (1)
seymoo (1)
limin321 (1)

Top Pull Request Authors

Top Issue Labels

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Package metadata

Total packages: 3
Total downloads:
- cran: 998 last-month
Total docker downloads: 21,383
Total dependent packages: 6 (may contain duplicates)
Total dependent repositories: 9 (may contain duplicates)
Total versions: 7
Total maintainers: 1

cran.r-project.org: phylogram

Dendrograms for Evolutionary Analysis

Homepage: http://github.com/ropensci/phylogram
Documentation: http://cran.r-project.org/web/packages/phylogram/phylogram.pdf
Licenses: GPL-3
Latest release: 2.1.0 (published almost 8 years ago)
Last Synced: 2026-06-17T23:02:41.304Z (5 days ago)
Versions: 5
Dependent Packages: 5
Dependent Repositories: 8
Downloads: 998 Last month
Docker Downloads: 21,383
Rankings:
- Dependent packages count: 8.153%
- Dependent repos count: 10.465%
- Docker downloads count: 12.542%
- Average: 12.909%
- Forks count: 14.153%
- Downloads: 15.68%
- Stargazers count: 16.461%
Maintainers (1)
- shaunpwilkinson@gmail.com

conda-forge.org: r-phylogram

Homepage: http://github.com/ropensci/phylogram
Licenses: GPL-3.0-only
Latest release: 2.1.0 (published about 6 years ago)
Last Synced: 2026-04-01T03:21:35.987Z (3 months ago)
Versions: 1
Dependent Packages: 1
Dependent Repositories: 1
Rankings:
- Dependent repos count: 24.377%
- Dependent packages count: 28.978%
- Average: 41.357%
- Stargazers count: 55.602%
- Forks count: 56.47%

guix: r-phylogram

Dendrograms for evolutionary analysis

Homepage: https://github.com/ropensci/phylogram/
Documentation: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/cran.scm#n48372
Licenses: gpl3
Latest release: 2.1.0 (published 4 months ago)
Last Synced: 2026-04-07T12:03:16.865Z (3 months ago)
Versions: 1
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 100%

Dependencies

DESCRIPTION cran

ape >= 4.0 imports
methods * imports
stats * imports
dendextend * suggests
knitr * suggests
rmarkdown * suggests
testthat * suggests

ecosyste.ms

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Summary