JOSS: https://github.com/betteridiot/bamnostic

Score: 14.972953860896041

Last synced: about 12 hours ago
JSON representation

Repository metadata:

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

• Host: GitHub
• URL: https://github.com/betteridiot/bamnostic
• Owner: betteridiot
• License: bsd-3-clause
• Created: 2018-02-16T17:57:09.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2026-01-27T18:21:49.000Z (5 months ago)
• Last Synced: 2026-05-13T08:57:47.500Z (about 1 month ago)
• Language: Python
• Homepage: https://bamnostic.readthedocs.io/en/latest/?badge=latest
• Size: 9.78 MB
• Stars: 99
• Watchers: 2
• Forks: 25
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Codemeta: codemeta.json

CodeMeta metadata:

• @context:
  • http://schema.org
  • • Author:
      • @id: schema:author
      • @container: @list
• @type: Code
• Title: bamnostic
• Name: BAMnostic: a Pure Python OS, version, and runtime agnostic BAM file parser
• Author:
  • • @id: https://orcid.org/0000-0002-0243-4609
    • @type: Person
    • Email: mdsherm@umich.edu
    • Name: Marcus D Sherman
    • Affiliation: Department of Computational Medicine and Bioinformatics, University of Michigan
  • • @id: https://orcid.org/0000-0003-3425-6998
    • @type: Person
    • Email: remills@med.umich.edu
    • Name: Ryan E Mills
    • Affiliation:
      • Department of Computational Medicine and Bioinformatics, University of Michigan
      • Department of Human Genetics, University of Michigan
• Copyright holder:
  • @type: Organization
  • Email: copyright@umich.edu
  • Name: University of Michigan
• Copyright year: 2018
• Creator:
  • @id: https://orcid.org/0000-0002-0243-4609
• Maintainer: https://orcid.org/0000-0002-0243-4609
• Code repository: https://github.com/betteridiot/bamnostic
• Date modified: 2025-06-27
• Description: BAMnostic is a Pure Python OS, version, and runtime agnostic BAM file parser
• Keywords: BAM, pysam, genomics, genetics, htslib, samtools
• License: https://github.com/betteridiot/bamnostic/blob/master/LICENSE
• Software version: v1.2
• Version: v1.2
• Readme: https://github.com/betteridiot/bamnostic/blob/master/README.md
• Build instructions: https://github.com/betteridiot/bamnostic/blob/master/README.md
• Issue tracker: https://github.com/betteridiot/bamnostic/issues
• Funder: National Institutes of Health [R01HG007068]
• Programming language:
  • Name: Python
  • Url: https://www.python.org/
• Download url:
  • https://github.com/codemeta/codemetar/releases/
  • https://pypi.org/project/bamnostic/
  • https://anaconda.org/conda-forge/bamnostic

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Owner metadata:

• Name: Marcus D Sherman
• Login: betteridiot
• Email:
• Kind: user
• Description: PhD candidate in DCMB at the UMich. Member of @mills-lab. @PyDataAnnArbor volunteer, @PyCon staff
• Website:
• Location: Portland, Maine
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/25447319?u=ba28cf5e36ca3da0e77f7086e76e57ae837d9909&v=4
• Repositories: 5
• Last Synced at: 2023-04-26T17:33:16.503Z
• Profile URL: https://github.com/betteridiot

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GitHub Events

Total

• Create event: 1
• Fork event: 4
• Issue comment event: 8
• Pull request event: 3
• Push event: 6
• Watch event: 5
• Total: 27

Last Year

• Create event: 1
• Fork event: 4
• Issue comment event: 6
• Pull request event: 3
• Push event: 6
• Watch event: 4
• Total: 24

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Committers metadata

Last synced: 8 months ago

Name	Email	Commits
betteridiot	m****n@b****h	334
stickler-ci	s****t@s****m	7
Pay Giesselmann	p****n@w****e	3
Logan Walker	l****r@m****m	2
gmat	g****k@y****r	1
OliverVoogd	5****d	1
Olga Botvinnik	o****k@g****m	1
Mario Fasold	f****d@g****m	1
Jun Mencius	6****s	1

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Issue and Pull Request metadata

Last synced: 10 months ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/betteridiot/bamnostic

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Package metadata

• Total packages: 2
• Total downloads:
  • pypi: 3,460 last-month
• Total dependent packages: 3 (may contain duplicates)
• Total dependent repositories: 2 (may contain duplicates)
• Total versions: 81
• Total maintainers: 1

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Dependencies