Collections: JOSS
https://github.com/vsoch/gridtest
grid parameters and testing for Python modules and functions
gridtest testing yaml
Last synced: 27 Aug 2026
https://github.com/dirmeier/surjectors
Surjection layers for density estimation with normalizing flows
bijections density-estimation normalizing-flows python surjections
Last synced: 27 Aug 2026
https://github.com/SMTG-Bham/ThermoParser
A tool for streamlining data analysis and visualisation for thermoelectrics and charge carrier transport in computational materials science.
chemistry computational-chemistry computational-materials-science materials materials-science matplotlib physics plotting python science thermoelectric tp
Last synced: 27 Aug 2026
https://github.com/AngryMaciek/angry-moran-simulator
A general game-theoretical framework to carry out scientific simulations of populations' evolution according to the Moran model 🧮
evolutionary-game-theory moran-process population-genetics python python-package
Last synced: 27 Aug 2026
https://github.com/dms-view/dms-view.github.io
Interactive visualization of mutational antigenic profiling data
Last synced: 27 Aug 2026
https://github.com/Sbozzolo/kuibit/
Python 3 post-processing tools for simulations performed with the Einstein Toolkit
Last synced: 27 Aug 2026
https://github.com/4DModeller/fdmr
4DModeller, Bayesian Spatio-temporal modeling in R
Last synced: 27 Aug 2026
https://github.com/kineticstoolkit/kineticstoolkit
An Open-Source Python Package to Facilitate Research in Biomechanics
api biomechanics kinematics kinetics python toolbox
Last synced: 27 Aug 2026
https://github.com/n8thangreen/BCEA/
Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the "reference") to the others ("comparators"). Produces many summary and plots to analyse the results
bayesian cost-effectiveness
Last synced: 27 Aug 2026
https://github.com/DiamondLightSource/volume-segmantics
A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models
Last synced: 27 Aug 2026
https://github.com/milnus/Corekaburra
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
Last synced: 27 Aug 2026
https://github.com/migueldvb/cine
Calculate infrared pumping rates by solar radiation
astronomy comets python science
Last synced: 26 Aug 2026
https://github.com/berenslab/MorphoPy
A Python package for feature extraction of neural morphologies
Last synced: 27 Aug 2026
https://github.com/DoSOCSv2/DoSOCSv2
SPDX 2.0 document creation and storage
Last synced: 26 Aug 2026
https://github.com/nkallima/Synch-Framework
An open-source framework for concurrent data-structures and benchmarks. 🛠️ Latest Dev Branch: v3.4.0-dev 🚀 https://github.com/nkallima/Synch-Framework/tree/v3.4.0-dev
benchmarks cc-synch concurrency concurrent-programming concurrent-queues concurrent-stacks machine-architectures osci parallel-programming performance-impact performance-overheads psim pthreads queue-locks
Last synced: 27 Aug 2026
https://github.com/BerkeleyLab/caffeine
A parallel runtime library for Fortran compilers
coarray coarray-fortran fortran-2018 fortran-2023 parallel-computing parallel-programming parallelism partitioned-global-address-space pgas runtime-library
Last synced: 27 Aug 2026
https://github.com/ropensci-archive/cleanEHR
:warning: ARCHIVED :warning: Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC
big-data critical-care electronic-health-record healthcare intensive-care r r-package rstats
Last synced: 26 Aug 2026
https://github.com/tud-hri/joan
JOAN is an software package that allows to perform human-in-the loop experiments in the open source driving simulator CARLA. JOAN facilitates communication between human input devices and CARLA, the implementation of haptic feedback, systematically storing experiment data, and the automatic execution of experiments with multiple experimental conditions.
driving-simulator experiments human-in-the-loop
Last synced: 27 Aug 2026
https://github.com/hjkgrp/SESAMI_web
The interface to the SESAMI analysis tools
Last synced: 27 Aug 2026
https://github.com/hexatomic/hexatomic
Hexatomic is an extensible software for deep multi-layer annotation of linguistic corpora
annotation-tool corpus-linguistics
Last synced: 27 Aug 2026
https://github.com/biocircuits/bioscrape/
Bioscrape: Biological Modeling, Simulation, and Parameter Estimation
chemical-reaction-networks crn cython parameter-identification python simulation stochastic-simulation-algorithm
Last synced: 26 Aug 2026
https://github.com/kellykochanski/rescal-snow
A model of dunes and snow-waves
Last synced: 26 Aug 2026
https://github.com/pacificclimate/ClimDown
PCIC's Daily Climate Downscaling Library
Last synced: 27 Aug 2026
https://github.com/momargoh/MCycle
A Python package for 1D sizing and analysis of thermodynamic power cycles
heat-exchanger heat-transfer power-cycle thermodynamics thermodynamics-models
Last synced: 27 Aug 2026
https://github.com/nmfs-ost/SSMSE
Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)
stock-synthesis
Last synced: 27 Aug 2026
https://github.com/SGpp/DisCoTec/
MPI-based code for distributed HPC simulations with the sparse grid combination technique. Docs->(https://discotec.readthedocs.io/)
combination-technique higher-dimensional multi-scale simulation sparse-grids vlasov-solver
Last synced: 27 Aug 2026
https://github.com/barbagroup/AmgXWrapper
AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library
amgx gpu mpi nvidia petsc
Last synced: 27 Aug 2026
https://gitlab.com/dmt-development/dmt-core
Device modeling toolkit core package
Electrical Engineering python python3
Last synced: 27 Aug 2026
https://github.com/MrShoenel/metrics-as-scores
Contains the data and scripts needed for the application Metrics as Scores
Last synced: 27 Aug 2026
https://github.com/labsyspharm/minerva-story
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
immunofluorescence microscopy minerva ome
Last synced: 27 Aug 2026
https://gitlab.com/dlr-ve/esy/amiris/amiris
**A**gent-based **M**arket model for the **I**nvestigation of **R**enewable and **I**ntegrated energy **S**ystems
agent-based-modeling electricity market modelling energy transition
Last synced: 27 Aug 2026
https://github.com/cmelab/flowerMD
Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics.
hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation
Last synced: 27 Aug 2026
https://github.com/engyasin/Offline_MOT
Multiple traffic entities detection and tracking from bird-view drone stationary videos https://engyasin.github.io/Offline_MOT/
drone multiple-object-tracking object-detection python
Last synced: 27 Aug 2026
https://github.com/thraraujo/pysymmpol
A Python package for calculating and performing basic manipulations on symmetric polynomials.
combinatorics jupyerlab physics python
Last synced: 27 Aug 2026
https://github.com/AFD-Illinois/iharm3d/
Hybrid MPI/OpenMP 3D HARM with vectorization
Last synced: 27 Aug 2026
https://github.com/SimonGreenhill/phylogemetric
Python library for calculating the delta score (Holland et al. 2002) and Q-Residual (Gray et al. 2010)
phylogenetics
Last synced: 26 Aug 2026
https://gitlab.com/cosmograil/PyCS3
PyCS for python 3
time series time-delay cosmography time-delay measurements
Last synced: 27 Aug 2026
https://github.com/cicirello/JavaPermutationTools
A Java library for computation on permutations and sequences
edit-distance permutation-distance permutation-distance-metrics permutations sequences string-distance
Last synced: 26 Aug 2026
https://github.com/m-d-grunnill/MetaCast
A package for broadcasting epidimiological and ecological models over metapopulations.
Last synced: 27 Aug 2026
https://github.com/ssp-research/ospgrillage
`ospgrillage` is a package that wraps `OpenSeesPy` with an interface dedicated to the development and analysis of regular bridge deck grillage models.
bridge-engineering bridges finite-element-analysis structural-analysis structural-engineering
Last synced: 27 Aug 2026
https://github.com/kostergroup/SIMsalabim
A 1D drift-diffusion simulator for semiconductor devices (LEDs, solar cells, diodes, organics, perovskites)
Last synced: 27 Aug 2026
https://github.com/ckdckd145/statmanager-kr
Open-source statistical package in Python based on Pandas
clinical-trials correlation-analysis easy-to-use null-hypothesis pandas pandas-python posthoc-comparisons research social-science statistical-analysis statistical-methods statistical-tests statistics ttest user-friendly visualize-differences visualizes-data
Last synced: 27 Aug 2026
https://github.com/bioAI-Oslo/Spikeometric
Spiking Neural Network Simulator based on Generalized Linear Models
Last synced: 27 Aug 2026
https://github.com/upb-lea/ElectricGrid.jl
A time domain electrical energy grid modeling and simulation tool with a focus on the control of power electronics converters
Last synced: 27 Aug 2026
https://github.com/vaneseltine/nominally
A maximum-strength name parser for record linkage.
data-matching data-science deduplication entity-resolution human-name parser parsing record-linkage
Last synced: 27 Aug 2026
https://github.com/danhey/maelstrom
Forward modelling of pulsating stars in binaries
asteroseismology astronomy astrophysics bayesian-inference binaries mcmc pymc3
Last synced: 27 Aug 2026
https://github.com/ropensci/refsplitr
R package for processing, organizing, and visualizing reference records downloaded from the Web of Science.
Last synced: 27 Aug 2026
https://github.com/FSEC-Photovoltaics/pvrpm-lcoe
PV Simulation using SAM and Python
Last synced: 27 Aug 2026
https://github.com/zabore/riskclustr
R package of functions for the study of etiologic heterogeneity
Last synced: 26 Aug 2026
https://github.com/ropensci-archive/lawn
:no_entry: ARCHIVED :no_entry: Client for 'Turfjs' for 'Geospatial' Analysis
geojson geospatial r r-package rstats turf turfjs
Last synced: 26 Aug 2026
https://github.com/Quantinuum/qujax
Simulating quantum circuits with JAX
jax python quantum
Last synced: 27 Aug 2026
https://github.com/ropensci/coder
Classification of Cases into Deterministic Categories
classification icd-10 package r r-package rstats
Last synced: 27 Aug 2026
https://github.com/FLCAC-admin/LCIAformatter
Standardizes the format and flows of life cycle impact assessment (LCIA) data.
Last synced: 27 Aug 2026
https://github.com/rempsyc/rempsyc/
Package of convenience functions to make your workflow faster and easier. Easily customizable plots (via ggplot2), nice APA tables exportable to Word (via flextable), easily run statistical tests or check assumptions, and automatize various other tasks.
convenience-functions ggplot2 psychology r rstats statistics visualization
Last synced: 27 Aug 2026
https://github.com/NatLabRockies/graph-env
Reinforcement learning for combinatorial optimization over directed graphs
graph-algorithms gym-environment machine-learning python ray reinforcement-learning
Last synced: 27 Aug 2026
https://github.com/metaisbeta/asniffer
Tool to extract Code Annotations Metrics
Last synced: 27 Aug 2026
https://github.com/qiime2/q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
hacktoberfest
Last synced: 26 Aug 2026
https://github.com/LTLA/basilisk
Clone of the Bioconductor repository for the basilisk package.
bioconductor-package
Last synced: 27 Aug 2026
https://github.com/konkolyseismolab/seismolab
Open-source python framework for downloading, analyzing, and visualizing data of variable stars from space-based surveys.
Last synced: 27 Aug 2026
https://github.com/klb2/qmkpy
Python testbed for the Quadratic Multiple Knapsack Problem (QMKP)
knapsack-problem multiple-knapsack-problem operations-research optimization python qmkp qmkpy quadractic-multiple-knapsack-problem quadratic-knapsack-problem
Last synced: 27 Aug 2026
https://github.com/bmorris3/aesop
ARC Echelle Spectroscopic Observation Pipeline (aesop)
astronomy python spectroscopy
Last synced: 27 Aug 2026
https://github.com/hansenjohnson/WhaleMap
Collate and visualize whale survey results in the NW Atlantic
Last synced: 27 Aug 2026
https://github.com/neuropsychology/Neuropsydia.py/
A Python Module for Creating Experiments, Tasks and Questionnaires.
assessment experiments neuropsychology psychology python questionnaire tasks
Last synced: 27 Aug 2026
https://github.com/EHTJulia/ScatteringOptics.jl
A Julia package to simulate and model interstellar scattering in strong regime.
Last synced: 27 Aug 2026
https://github.com/CouncilDataProject/cookiecutter-cdp-deployment
Cookiecutter template for creating new CDP instances.
cdp-deployments civic-tech cookiecutter-template government-data local-government open-government
Last synced: 27 Aug 2026
https://github.com/hyriver/hyriver.github.io
A Python software stack for retrieving hydroclimate data from web services.
climate data hydrology python webservice
Last synced: 27 Aug 2026
https://github.com/donaldRwilliams/BGGM
Bayesian Gaussian Graphical Models
bayes-factors bayesian-hypothesis-testing gaussian-graphical-models
Last synced: 27 Aug 2026
https://github.com/mattgolub/fixed-point-finder
FixedPointFinder: A Tensorflow toolbox for identifying and characterizing fixed points in recurrent neural networks
Last synced: 27 Aug 2026
https://github.com/sanger-pathogens/mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Last synced: 27 Aug 2026
https://github.com/ImperialCollegeLondon/wsi
WSIMOD is a software for simulating water quality and quantity
hacktoberfest hydrology integrated-modelling pollution python wastewater water-quality
Last synced: 27 Aug 2026
https://github.com/tibordome/cosmic_profiles
Implements 3D point cloud algorithms for estimation and fitting of shape and density profiles
astronomy cosmological-simulations point-cloud
Last synced: 27 Aug 2026
https://github.com/2decomp-fft/2decomp-fft
The 2DECOMP&FFT library provides access to a slabs and pencil decompositions as well as FFTs.
fast-fourier-transform finite-difference-method pencil-decomposition
Last synced: 27 Aug 2026
https://github.com/spectralcode/OCTproZ
OCTproZ is an open source software for optical coherence tomography processing and visualization.
cuda dsp gpu-processing medical-image-processing mhz-oct nvidia-jetson-nano oct optical-coherence-tomography optics qt visualization
Last synced: 27 Aug 2026
https://github.com/exafmm/exafmm-t
A kernel-independent fast multipole method library with Python interface.
Last synced: 27 Aug 2026
https://github.com/bootphon/pygamma-agreement/
Gamma Agreement in Python
agreement annotation-tool annotations gamma-agreement natural-language-processing speech
Last synced: 27 Aug 2026
https://github.com/uw-comphys/openccm
OpenCCM is a CFD-based compartment modelling software package. It is primarily intended for convection dominated reactive flows which feature a weak or one-way coupling between the reactive species and the carrier fluid, i.e. the reaction does not substantially influence the fluid flow over the course of the simulation.
Last synced: 27 Aug 2026
https://github.com/GPUE-group/GPUE
GPU Gross-Pitaevskii Equation numerical solver for Bose-Einstein condensates.
cuda fft gpu numerical-calculations physics quantum-mechanics research simulation superfluid
Last synced: 26 Aug 2026
https://github.com/CFSAN-Biostatistics/SeroTools
A toolkit and repository for the White-Kauffmann-Le Minor scheme for Salmonella serotyping.
Last synced: 27 Aug 2026
https://github.com/markheckmann/OpenRepGrid.ic
shiny app for interpretive clustering of repgrids:
clustering constructs grid repertory repgrid shiny
Last synced: 27 Aug 2026
https://github.com/reichlab/flusight
Influenza forecasts visualizer
epidemiology forecasting influenza prediction statistics visualizer
Last synced: 26 Aug 2026
https://github.com/syasini/AstroPaint
A python package for creating mock maps of astrophysical signals from a halo catalog
astrophysical-signals cosmology halo-catalog python simulation-toolkit
Last synced: 27 Aug 2026
https://github.com/TRI-AMDD/materialnet
Visualization for TRI materials network data
Last synced: 27 Aug 2026
https://github.com/maxibor/sourcepredict
Prediction/source tracking of metagenomic samples source using machine learning
machine-learning microbiome source-tracking
Last synced: 26 Aug 2026
https://github.com/JustinYKC/FEPOPS
Python implementation of the FEPOPS molecular descriptors
Last synced: 27 Aug 2026
https://github.com/kavir1698/EvoDynamics.jl
Simulation of eco-evolutionary dynamics on multi-trait networks
Last synced: 27 Aug 2026
https://github.com/lumen-org/lumen
Interactive web application for the exploration, comparision and validation of probability models and its data
web-application
Last synced: 27 Aug 2026
https://github.com/MonashBioinformaticsPlatform/RNAsik-pipe
RNAsik - more than just a pipeline
Last synced: 27 Aug 2026
https://github.com/BlueBrain/BlueCelluLab
Biologically detailed neural network simulations and analysis API
api biology brain cell circuit connection emodel network neural-network neuron neuroscience python simulation
Last synced: 27 Aug 2026
https://github.com/tlverse/origami
:game_die: :crystal_ball: Comprehensive Cross-Validation Engine
cross-validation machine-learning
Last synced: 26 Aug 2026
https://github.com/FastNFT/FNFT
Fast numerical computation of (inverse) nonlinear Fourier transforms
c matlab-interface nonlinear-fourier-transform python-interface
Last synced: 27 Aug 2026
https://github.com/owlbarn/owl_ode/
Owl's Differential Equation Solvers
differential-equations engineering-computation ocaml ode ode-solver scientific-computing sundials
Last synced: 27 Aug 2026
https://github.com/Magritte-code/pomme
Bayesian model reconstruction based on astronomical spectral line observations.
3d-reconstruction astronomy-astrophysics astronomy-software interferometry inverse-problem spectral-lines
Last synced: 27 Aug 2026
https://github.com/equib/pyEQUIB
pyEQUIB - Python Package for Plasma Diagnostics and Abundance Analysis
atomic-level-populations chemical-elements line-emissivities pyequib python statistical-equilibrium
Last synced: 27 Aug 2026
https://github.com/sumbose/iRF
iterative Random Forests (iRF): iteratively grows weighted random forests, finds interaction among features
Last synced: 26 Aug 2026
Statistics
- Projects: 2,889
- Last updated: over 1 year ago