JOSS: https://github.com/milnus/Corekaburra
Score: 7.1049654482698426
Last synced: about 10 hours ago
JSON representation
Repository metadata:
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
- Host: GitHub
- URL: https://github.com/milnus/Corekaburra
- Owner: milnus
- License: mit
- Created: 2020-10-25T01:30:20.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2026-04-10T09:04:46.000Z (2 months ago)
- Last Synced: 2026-05-27T08:27:22.175Z (26 days ago)
- Language: Python
- Size: 2.58 MB
- Stars: 6
- Watchers: 1
- Forks: 4
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
Owner metadata:
- Name: Magnus G. Jespersen
- Login: milnus
- Email:
- Kind: user
- Description: PhD student at The University of Melbourne | Davies Lab | Microbial genomics | Streptococcus Pyogenes | Multi omics analysis
- Website:
- Location: Melbourne, Australia
- Twitter: magnus_gj
- Company:
- Icon url: https://avatars.githubusercontent.com/u/44769523?u=41720c6a26804e9805eb9b8179014963ec01f61f&v=4
- Repositories: 3
- Last Synced at: 2023-03-06T03:43:18.756Z
- Profile URL: https://github.com/milnus
GitHub Events
Total
- Delete event: 2
- Issues event: 2
- Push event: 4
- Release event: 1
- Total: 9
Last Year
- Delete event: 2
- Issues event: 1
- Push event: 4
- Release event: 1
- Total: 8
Committers metadata
Last synced: 20 days ago
Total Commits: 356
Total Committers: 3
Avg Commits per committer: 118.667
Development Distribution Score (DDS): 0.011
Commits in past year: 7
Committers in past year: 1
Avg Commits per committer in past year: 7.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| milnus | 4****s | 352 |
| Charlotte Soneson | c****n@g****m | 3 |
| Andrew Hayes | 2****t | 1 |
Issue and Pull Request metadata
Last synced: 2 months ago
Total issues: 10
Total pull requests: 15
Average time to close issues: 3 months
Average time to close pull requests: about 13 hours
Total issue authors: 4
Total pull request authors: 3
Average comments per issue: 0.8
Average comments per pull request: 0.0
Merged pull request: 15
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: about 20 hours
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- milnus (4)
- iferres (3)
- BiologicalScientist (2)
- asafpr (1)
Top Pull Request Authors
- milnus (13)
- BiologicalScientist (1)
- csoneson (1)
Top Issue Labels
- enhancement (2)
- bug (2)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 57 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
pypi.org: corekaburra
A commandline bioinformatics tool to utilize syntenic information from genomes in the context of pan-genomes
- Homepage: https://github.com/milnus/Corekaburra
- Documentation: https://corekaburra.readthedocs.io/
- Licenses: LICENSE
- Latest release: 0.1.1 (published 2 months ago)
- Last Synced: 2026-06-02T14:01:26.262Z (20 days ago)
- Versions: 6
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 57 Last month
-
Rankings:
- Dependent packages count: 10.052%
- Forks count: 15.314%
- Stargazers count: 23.051%
- Average: 30.68%
- Downloads: 37.623%
- Dependent repos count: 67.358%
- Maintainers (1)
Dependencies
- actions/checkout main composite
- actions/setup-python v1 composite
- pypa/gh-action-pypi-publish master composite
- actions/checkout v2 composite
- actions/checkout v3 composite
- codecov/codecov-action v3 composite
- actions/checkout v2 composite
- python 3.9.7-buster build
- biopython ==1.79 development
- gffutils >=0.10.1 development
- networkx >=2.6.3 development
- numpy >=1.23.4 development
- pylint * development
- biopython ==1.79