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JOSS: https://github.com/milnus/Corekaburra

Score: 7.1049654482698426

Last synced: about 10 hours ago
JSON representation

Repository metadata:

Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes


Owner metadata:


GitHub Events

Total
Last Year

Committers metadata

Last synced: 20 days ago

Total Commits: 356
Total Committers: 3
Avg Commits per committer: 118.667
Development Distribution Score (DDS): 0.011

Commits in past year: 7
Committers in past year: 1
Avg Commits per committer in past year: 7.0
Development Distribution Score (DDS) in past year: 0.0

Name Email Commits
milnus 4****s 352
Charlotte Soneson c****n@g****m 3
Andrew Hayes 2****t 1

Issue and Pull Request metadata

Last synced: 2 months ago

Total issues: 10
Total pull requests: 15
Average time to close issues: 3 months
Average time to close pull requests: about 13 hours
Total issue authors: 4
Total pull request authors: 3
Average comments per issue: 0.8
Average comments per pull request: 0.0
Merged pull request: 15
Bot issues: 0
Bot pull requests: 0

Past year issues: 1
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: about 20 hours
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/milnus/Corekaburra

Top Issue Authors

  • milnus (4)
  • iferres (3)
  • BiologicalScientist (2)
  • asafpr (1)

Top Pull Request Authors

  • milnus (13)
  • BiologicalScientist (1)
  • csoneson (1)

Top Issue Labels

  • enhancement (2)
  • bug (2)

Top Pull Request Labels


Package metadata

pypi.org: corekaburra

A commandline bioinformatics tool to utilize syntenic information from genomes in the context of pan-genomes

  • Homepage: https://github.com/milnus/Corekaburra
  • Documentation: https://corekaburra.readthedocs.io/
  • Licenses: LICENSE
  • Latest release: 0.1.1 (published 2 months ago)
  • Last Synced: 2026-06-02T14:01:26.262Z (20 days ago)
  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 57 Last month
  • Rankings:
    • Dependent packages count: 10.052%
    • Forks count: 15.314%
    • Stargazers count: 23.051%
    • Average: 30.68%
    • Downloads: 37.623%
    • Dependent repos count: 67.358%
  • Maintainers (1)

Dependencies

.github/workflows/Build_n_publish.yml actions
  • actions/checkout main composite
  • actions/setup-python v1 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/Test.yml actions
  • actions/checkout v2 composite
.github/workflows/code_cov_check.yml actions
  • actions/checkout v3 composite
  • codecov/codecov-action v3 composite
.github/workflows/test_dev.yml actions
  • actions/checkout v2 composite
Dockerfile docker
  • python 3.9.7-buster build
requirements-dev.txt pypi
  • biopython ==1.79 development
  • gffutils >=0.10.1 development
  • networkx >=2.6.3 development
  • numpy >=1.23.4 development
  • pylint * development
setup.py pypi
  • biopython ==1.79