JOSS: https://github.com/sanger-pathogens/mlst_check
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Score: 6.122492809514386
Last synced: about 23 hours ago
JSON representation
Repository metadata:
Multilocus sequence typing by blast using the schemes from PubMLST
- Host: GitHub
- URL: https://github.com/sanger-pathogens/mlst_check
- Owner: sanger-pathogens
- License: other
- Created: 2012-07-23T15:23:36.000Z (almost 14 years ago)
- Default Branch: master
- Last Pushed: 2022-06-23T22:51:30.000Z (about 4 years ago)
- Last Synced: 2026-04-03T13:56:24.897Z (3 months ago)
- Topics: bioinformatics, bioinformatics-pipeline, genomics, global-health, infectious-diseases, next-generation-sequencing, pathogen, research, sequencing
- Language: Perl
- Homepage: http://sanger-pathogens.github.io/mlst_check/
- Size: 5.23 MB
- Stars: 30
- Watchers: 3
- Forks: 15
- Open Issues: 8
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Citation: CITATIONS.md
- Authors: AUTHORS
Owner metadata:
- Name: Pathogen Informatics, Wellcome Sanger Institute
- Login: sanger-pathogens
- Email:
- Kind: organization
- Description:
- Website: http://www.sanger.ac.uk/science/groups/pathogen-informatics
- Location: Hinxton, Cambs., UK
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/130803?v=4
- Repositories: 54
- Last Synced at: 2023-03-10T20:02:30.795Z
- Profile URL: https://github.com/sanger-pathogens
GitHub Events
Total
- Issue comment event: 1
- Watch event: 1
- Total: 2
Last Year
- Total: 0
Committers metadata
Last synced: 3 months ago
Total Commits: 235
Total Committers: 12
Avg Commits per committer: 19.583
Development Distribution Score (DDS): 0.549
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| andrewjpage | a****e@g****m | 106 |
| Ben Taylor | b****r@s****k | 78 |
| Sara Sjunnebo | s****4@s****k | 17 |
| Craig Porter | c****7@s****k | 13 |
| Carla Cummins | c****1@s****k | 12 |
| Martin Aslett | m****a@s****k | 2 |
| Nishadi De Silva | n****s@s****k | 2 |
| vaofford | v****1@s****k | 1 |
| kathryn1995 | k****2@s****k | 1 |
| William Roberts | w****7@s****k | 1 |
| Tim Stickland | t****d@s****k | 1 |
| Sara Sjunnebo | s****o@g****m | 1 |
Issue and Pull Request metadata
Last synced: 9 months ago
Total issues: 13
Total pull requests: 81
Average time to close issues: 18 days
Average time to close pull requests: 2 days
Total issue authors: 13
Total pull request authors: 12
Average comments per issue: 1.15
Average comments per pull request: 0.1
Merged pull request: 81
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- novitch (1)
- ssjunnebo (1)
- sekhwal (1)
- BioMEC (1)
- buihoangphuc412 (1)
- ghost (1)
- happykhan (1)
- hafizmtalha (1)
- chahatupreti (1)
- bastian-wur (1)
- VoronDM (1)
- bgold04 (1)
- neelam19051 (1)
Top Pull Request Authors
- andrewjpage (37)
- bewt85 (13)
- ssjunnebo (8)
- CraigPorter (6)
- carlacummins (5)
- jyothishnt (4)
- aslett1 (3)
- vaofford (1)
- trstickland (1)
- Lfulcrum (1)
- kathryn1995 (1)
- nds (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 2
- Total downloads: unknown
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 15
- Total maintainers: 1
proxy.golang.org: github.com/sanger-pathogens/mlst_check
- Homepage:
- Documentation: https://pkg.go.dev/github.com/sanger-pathogens/mlst_check#section-documentation
- Licenses:
- Latest release: v2.1.1706216+incompatible (published about 6 years ago)
- Last Synced: 2026-04-03T09:00:45.762Z (3 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.937%
- Average: 5.103%
- Dependent repos count: 5.269%
metacpan.org: Bio-MLST-Check
Multilocus sequence type checking using blast
- Homepage: http://www.sanger.ac.uk/
- Licenses: gpl_3
- Latest release: 2.1.1706216 (published over 9 years ago)
- Last Synced: 2026-04-03T09:00:47.598Z (3 months ago)
- Versions: 13
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Forks count: 0.747%
- Stargazers count: 0.856%
- Dependent repos count: 1.554%
- Average: 8.841%
- Dependent packages count: 32.208%
- Maintainers (1)