JOSS: https://github.com/biocircuits/bioscrape/
chemical-reaction-networks crn cython parameter-identification python simulation stochastic-simulation-algorithm
Score: 6.340359303727752
Last synced: about 15 hours ago
JSON representation
Repository metadata:
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
- Host: GitHub
- URL: https://github.com/biocircuits/bioscrape/
- Owner: biocircuits
- License: mit
- Created: 2018-05-04T21:43:17.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2025-03-29T02:09:32.000Z (about 1 year ago)
- Last Synced: 2026-06-05T16:03:18.801Z (17 days ago)
- Topics: chemical-reaction-networks, crn, cython, parameter-identification, python, simulation, stochastic-simulation-algorithm
- Language: Jupyter Notebook
- Homepage:
- Size: 180 MB
- Stars: 30
- Watchers: 3
- Forks: 19
- Open Issues: 33
-
Metadata Files:
- Readme: README.md
- Contributing: contributing.md
- License: LICENSE
Owner metadata:
- Name: biocircuits
- Login: biocircuits
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/34864391?v=4
- Repositories: 3
- Last Synced at: 2023-03-08T23:42:19.450Z
- Profile URL: https://github.com/biocircuits
GitHub Events
Total
- Create event: 5
- Delete event: 3
- Fork event: 1
- Issue comment event: 14
- Issues event: 1
- Pull request event: 12
- Pull request review event: 6
- Push event: 18
- Watch event: 11
- Total: 71
Last Year
- Pull request event: 1
- Watch event: 1
- Total: 2
Committers metadata
Last synced: 3 days ago
Total Commits: 402
Total Committers: 9
Avg Commits per committer: 44.667
Development Distribution Score (DDS): 0.463
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| ayush9pandey | a****y@g****m | 216 |
| sclamons | s****s@g****m | 59 |
| William Poole | w****e@c****u | 53 |
| William Poole | w****x@h****m | 44 |
| Anandh Swaminathan | a****m@g****m | 25 |
| sclamons | s****s@S****l | 2 |
| Richard Murray | m****y@c****u | 1 |
| Ayush Pandey | a****y@g****r | 1 |
| Anandh Swaminathan | a****n@A****l | 1 |
Issue and Pull Request metadata
Last synced: 3 months ago
Total issues: 59
Total pull requests: 60
Average time to close issues: 5 months
Average time to close pull requests: 11 days
Total issue authors: 13
Total pull request authors: 5
Average comments per issue: 1.78
Average comments per pull request: 1.17
Merged pull request: 51
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 10
Past year average time to close issues: N/A
Past year average time to close pull requests: 6 days
Past year issue authors: 1
Past year pull request authors: 3
Past year average comments per issue: 0.0
Past year average comments per pull request: 1.8
Past year merged pull request: 7
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- ayush9pandey (22)
- WilliamIX (14)
- sclamons (7)
- Robaina (4)
- zoltuz (2)
- Farnazmdi (2)
- murrayrm (2)
- sophiejwalton (1)
- oliviaywangn (1)
- mkratz (1)
- SpencerUyematsu (1)
- teddiclax (1)
- TiamHeydari (1)
Top Pull Request Authors
- ayush9pandey (42)
- WilliamIX (12)
- sclamons (3)
- murrayrm (2)
- csoneson (1)
Top Issue Labels
- Bioscrape Core (16)
- enhancement (14)
- bug (14)
- Lineages (11)
- documentation (11)
- Analysis Features (5)
- Inference (4)
- help wanted (3)
- question (2)
- invalid (1)
Top Pull Request Labels
- Bioscrape Core (5)
- Analysis Features (5)
- bug (4)
- enhancement (4)
- Lineages (3)
- documentation (2)
- Inference (2)
Dependencies
- Cython *
- beautifulsoup4 *
- emcee >=3.0.2
- lmfit *
- matplotlib *
- numpy >=1.16.5
- pandas *
- pytest *
- python-libsbml *
- scipy >=1.5.4
- sympy *
- beautifulsoup4 *
- cython *
- emcee *
- matplotlib *
- numpy *
- pandas *
- pytest *
- python-libsbml *
- scipy *
- sympy *
- actions/checkout v3 composite
- actions/setup-python v3 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- beautifulsoup4 *
- corner *
- cython *
- emcee *
- lmfit *
- matplotlib *
- numpy *
- pandas *
- pytest *
- python-libsbml *
- scipy *
- sympy *