coder

classification icd-10 package r r-package rstats

Score: 6.20050917404269

Last synced: about 7 hours ago
JSON representation

Repository metadata:

Classification of Cases into Deterministic Categories

Host: GitHub
URL: https://github.com/ropensci/coder
Owner: ropensci
Created: 2016-08-18T07:35:21.000Z (almost 10 years ago)
Default Branch: master
Last Pushed: 2025-05-05T15:19:58.000Z (about 1 year ago)
Last Synced: 2026-06-10T21:34:46.266Z (12 days ago)
Topics: classification, icd-10, package, r, r-package, rstats
Language: TeX
Homepage: https://docs.ropensci.org/coder/
Size: 74.9 MB
Stars: 22
Watchers: 2
Forks: 4
Open Issues: 7
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Codemeta: codemeta.json

CodeMeta metadata:

@context: https://doi.org/10.5063/schema/codemeta-2.0
@type: SoftwareSourceCode
Identifier: coder
Description: Fast categorization of items based on external code data identified by regular expressions. A typical use case considers patient with medically coded data, such as codes from the International Classification of Diseases ('ICD') or the Anatomic Therapeutic Chemical ('ATC') classification system. Functions of the package relies on a triad of objects: (1) case data with unit id:s and possible dates of interest; (2) external code data for corresponding units in (1) and with optional dates of interest and; (3) a classification scheme ('classcodes' object) with regular expressions to identify and categorize relevant codes from (2). It is easy to introduce new classification schemes ('classcodes' objects) or to use default schemes included in the package. Use cases includes patient categorization based on 'comorbidity indices' such as 'Charlson', 'Elixhauser', 'RxRisk V', or the 'comorbidity-polypharmacy' score (CPS), as well as adverse events after hip and knee replacement surgery.
Name: coder: Deterministic Categorization of Items Based on External Code Data
Code repository: https://github.com/ropensci/coder
Issue tracker: https://github.com/ropensci/coder/issues
License: https://spdx.org/licenses/GPL-2.0
Version: 1.0
Programming language:
- @type: ComputerLanguage
- Name: R
- Url: https://r-project.org
Runtime platform: R version 4.5.0 (2025-04-11)
Provider:
- @id: https://cran.r-project.org
- @type: Organization
- Name: Comprehensive R Archive Network (CRAN)
- Url: https://cran.r-project.org
Author:
- - @type: Person
  - Given name: Erik
  - Family name: Bulow
  - Email: eriklgb@gmail.com
  - @id: https://orcid.org/0000-0002-9973-456X
Maintainer:
- - @type: Person
  - Given name: Erik
  - Family name: Bulow
  - Email: eriklgb@gmail.com
  - @id: https://orcid.org/0000-0002-9973-456X
Software suggestions:
- - @type: SoftwareApplication
  - Identifier: covr
  - Name: covr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=covr
- - @type: SoftwareApplication
  - Identifier: testthat
  - Name: testthat
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=testthat
- - @type: SoftwareApplication
  - Identifier: knitr
  - Name: knitr
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=knitr
- - @type: SoftwareApplication
  - Identifier: rmarkdown
  - Name: rmarkdown
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=rmarkdown
- - @type: SoftwareApplication
  - Identifier: writexl
  - Name: writexl
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=writexl
Software requirements:
- 1:
  - @type: SoftwareApplication
  - Identifier: R
  - Name: R
  - Version: >= 3.5
- 2:
  - @type: SoftwareApplication
  - Identifier: data.table
  - Name: data.table
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=data.table
- 3:
  - @type: SoftwareApplication
  - Identifier: decoder
  - Name: decoder
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=decoder
- 4:
  - @type: SoftwareApplication
  - Identifier: generics
  - Name: generics
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=generics
- 5:
  - @type: SoftwareApplication
  - Identifier: methods
  - Name: methods
- 6:
  - @type: SoftwareApplication
  - Identifier: tibble
  - Name: tibble
  - Provider:
    - @id: https://cran.r-project.org
    - @type: Organization
    - Name: Comprehensive R Archive Network (CRAN)
    - Url: https://cran.r-project.org
  - Same as: https://CRAN.R-project.org/package=tibble
- System requirements:
File size: 348.64KB
Related link:
- https://docs.ropensci.org/coder/
- https://CRAN.R-project.org/package=coder
Release notes: https://github.com/ropensci/coder/blob/master/NEWS.md
Readme: https://github.com/ropensci/coder/blob/master/README.md
Cont integration:
- https://github.com/ropensci/coder/actions
- https://app.codecov.io/gh/ropensci/coder
Development status: https://www.repostatus.org/#active
Keywords:
- r
- package
- r-package
- classification
- icd-10
- rstats

Owner metadata:

Name: rOpenSci
Login: ropensci
Email: info@ropensci.org
Kind: organization
Description:
Website: https://ropensci.org/
Location: Berkeley, CA
Twitter: rOpenSci
Company:
Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
Repositories: 307
Last Synced at: 2023-03-10T20:30:59.242Z
Profile URL: https://github.com/ropensci

GitHub Events

Total

Issue comment event: 2
Issues event: 1
Push event: 1
Total: 4

Last Year

Issue comment event: 1
Push event: 1
Total: 2

Committers metadata

Last synced: 3 months ago

Total Commits: 300
Total Committers: 17
Avg Commits per committer: 17.647
Development Distribution Score (DDS): 0.11

Commits in past year: 2
Committers in past year: 1
Avg Commits per committer in past year: 2.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Erik Bülow	e**b@g**m	267
Erik Bulow	e**u@r**l	18
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
runner	r**r@M**l	1
David Robinson	a**d@g**m	1
GitHub Actions	a**s@g**m	1

Issue and Pull Request metadata

Last synced: 10 months ago

Total issues: 106
Total pull requests: 2
Average time to close issues: 2 months
Average time to close pull requests: 1 day
Total issue authors: 8
Total pull request authors: 2
Average comments per issue: 1.16
Average comments per pull request: 0.5
Merged pull request: 1
Bot issues: 1
Bot pull requests: 0

Past year issues: 2
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 2
Past year pull request authors: 0
Past year average comments per issue: 0.5
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 1
Past year bot pull requests: 0

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Dependencies

DESCRIPTION cran

R >= 3.3 depends
data.table * imports
decoder * imports
generics * imports
methods * imports
tibble * imports
covr * suggests
knitr * suggests
rmarkdown * suggests
testthat * suggests
writexl * suggests

.github/workflows/pkgcheck.yaml actions

ropensci-review-tools/pkgcheck-action main composite

ecosyste.ms

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