Collections: JOSS
https://github.com/RemieJanssen/phylox
A python package with tools for constructing, manipulating, and analyzing phylogenetic networks.
Last synced: 24 Aug 2026
https://github.com/NOSALRO/robot_dart
RobotDART: a versatile robot simulator for robotics and machine learning researchers
dart eigen3 magnum
Last synced: 24 Aug 2026
https://github.com/pierrepo/autoclasswrapper
AutoClassWrapper: a Python :snake: wrapper for AutoClass C classification :package: :rocket:
Last synced: 24 Aug 2026
https://github.com/jlustigy/coronagraph
A Python noise model for directly imaging exoplanets
astronomy coronagraph exoplanets spectroscopy
Last synced: 24 Aug 2026
https://github.com/biboyd/SALSA
Salsa is a Python package for constructing synthetic absorber catalogs from astrophysical hydrodynamic simulations
Last synced: 24 Aug 2026
https://github.com/csdms/bmi
The Basic Model Interface is a set of functions for coupling models to models and models to data
bmi c csdms cxx fortran geosciences interface java javascript julia numerical-modeling python
Last synced: 24 Aug 2026
https://github.com/salbalkus/CausalTables.jl
A new type of Table to store and simulate data for causal inference in Julia.
Last synced: 24 Aug 2026
https://github.com/qiangyicheng/flory
Python package for finding coexisting phases in multicomponent mixtures.
Last synced: 24 Aug 2026
https://github.com/benmaier/epipack
Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
Last synced: 24 Aug 2026
https://github.com/Open-Minds-Lab/MRdataset
MRdataset : unified interface to various neuroimaging dataset formats
mri neuroimaging neuroscience niqc quality-control
Last synced: 24 Aug 2026
https://github.com/JuliaDynamics/TransitionsInTimeseries.jl
Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection
change-point-detection critical-slowing-down critical-transitions early-warning-signals hacktoberfest nonlinear-dynamics nonlinear-timeseries-analysis resilience-loss tipping-points
Last synced: 24 Aug 2026
https://github.com/bjmorgan/lattice_mc
Lattice gas Monte Carlo simulation code
kinetic-monte-carlo lattice-gas monte-carlo monte-carlo-simulation solid-state-physics
Last synced: 24 Aug 2026
https://github.com/CompNet/Renard
Relationship Extraction from NARrative Documents
alias-resolution character-networks coreference-resolution ner network-extraction novels speaker-attribution
Last synced: 24 Aug 2026
https://github.com/opensacorg/trash-ai
Web based trash image classification
Last synced: 24 Aug 2026
https://github.com/SERVIR/servir-aces
Agricultural Classification and Estimation Service
agriculture mapping remote-sensing
Last synced: 24 Aug 2026
https://github.com/fairdataihub/SODA-for-SPARC
Simplifying data curation for researchers funded by the NIH SPARC initiative
curation mac sparc-dataset ubuntu windows
Last synced: 24 Aug 2026
https://github.com/JuliaRheology/RHEOS.jl
RHEOS - Open Source Rheology data analysis software
biomechanics engineering fractional materials-science rheology viscoelastic
Last synced: 24 Aug 2026
https://github.com/korem-lab/pymgpipe
Python implementation of mgpipe
cobra flux-balance-analysis metabolic-models metabolic-reconstruction mgpipe microbiome microbiome-modeling-toolbox modeling systems-biology
Last synced: 24 Aug 2026
https://github.com/xragua/xraybinaryorbit
A Python Package for Analyzing Orbital Modulations in X-ray Binaries
astrophysics orbital-mechanics x-ray-binaries
Last synced: 24 Aug 2026
https://github.com/abatten/fruitbat
A fast radio burst (FRB) redshift estimation package written in Python.
astronomy astrophysics dispersion dm frb measure python radio redshift
Last synced: 24 Aug 2026
https://github.com/underworldcode/UWGeodynamics
Underworld Geodynamics
geodynamics geodynamics-models geophysics hacktoberfest hacktoberfest2020 underworld-modelling
Last synced: 24 Aug 2026
https://github.com/Robaina/Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block
Last synced: 24 Aug 2026
https://github.com/dynamicslab/pysensors/
PySensors is a Python package for sparse sensor placement
optimization-tools sensor sensor-placement sensors
Last synced: 24 Aug 2026
https://github.com/fzi-forschungszentrum-informatik/TSInterpret
An Open-Source Library for the interpretability of time series classifiers
counterfactual-explanations explainable-ai explainable-artificial-intelligence explainable-ml feature-attribution interpretability interpretable-machine-learning interpretable-ml time-series
Last synced: 24 Aug 2026
https://github.com/suchanek/proteusPy
A package for the modeling and analysis of proteins of known structure
biophysics structural
Last synced: 24 Aug 2026
https://github.com/Cavenfish/autogamess
This is a python module for automating Raman calculations using GAMESS(us).
Last synced: 24 Aug 2026
https://github.com/BioGearsEngine/core
Repository for libbiogears and all core utilities
Last synced: 24 Aug 2026
https://github.com/epiforecasts/covidregionaldata
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
covid-19 data open-science r6 regional-data rstats
Last synced: 24 Aug 2026
https://github.com/KenethGarcia/ClassiPyGRB
This repository contains all the updates, code, and documentation related to ClassiPyGRB.
astrophysics grbs machine-learning machine-learning-algorithms unsupervised-learning unsupervised-machine-learning
Last synced: 24 Aug 2026
https://github.com/beardymcjohnface/Koverage
Quickly get coverage statistics given reads and an assembly
Last synced: 24 Aug 2026
https://github.com/PyFstat/PyFstat/
a python package for gravitational wave analysis with the F-statistic
astrophysics gravitational-waves gravity ligo neutron-star pycuda python3 virgo
Last synced: 24 Aug 2026
https://github.com/AStcherbinine/omegapy
Python tools for OMEGA/MEx observation data (importation/correction/display).
astronomy physics planetary-science python3
Last synced: 24 Aug 2026
https://github.com/bjmorgan/pyscses
PYthon Space-Charge Site-Explicit Solver
Last synced: 24 Aug 2026
https://github.com/mscaudill/openseize
Digital Signal Processing for Big EEGs
big-data eeg seizure signal-processing
Last synced: 24 Aug 2026
https://github.com/domschrei/mallob
Scalable Automated Reasoning for HPC and Clouds
Last synced: 24 Aug 2026
https://github.com/ybayle/Scyland3D
Scyland3D: Processing 3D landmarks
3d geometric-morphometric landmark landmark3d landmarks python semilandmark shape-analysis
Last synced: 24 Aug 2026
https://github.com/mei-friend/mei-friend
The mei-friend Web Application: Editing MEI in the Browser
digital-humanities edition editor mei mei-friend music-encoding music-notation verovio
Last synced: 24 Aug 2026
https://github.com/LightForm-group/xrdfit
Fitting of peaks from SXRD experiment for single and dual-phase Zr and Ti alloys.
Last synced: 24 Aug 2026
https://github.com/althonos/pyrodigal/
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd
Last synced: 24 Aug 2026
https://github.com/sjspielman/phyphy
Python HyPhy: Facilitating HyPhy execution and parsing
software
Last synced: 24 Aug 2026
https://github.com/OFFIS-DAI/Mango.jl
Modular Julia-based agent framework to implement multi-agent systems
agent agent-based agent-based-control agent-based-simulation distributed-computing multi-agent-systems
Last synced: 24 Aug 2026
https://github.com/ggciag/mandyoc
MANDYOC is a finite element code written on top of the PETSc library to simulate thermo-chemical convection of the Earth's mantle
Last synced: 24 Aug 2026
https://github.com/duxfrederic/lightcurver
A pipeline for precise extraction of light curves through forward modelling of a region from time-series wide-field astronomical images
astronomy observational-cosmology photometry photometry-pipeline
Last synced: 24 Aug 2026
https://github.com/jacob-long/jtools
Tools for summarizing/visualizing regressions and other helpful stuff
r r-package social-sciences
Last synced: 24 Aug 2026
https://github.com/trixi-framework/HOHQMesh
High Order Hex-Quad Mesh (HOHQMesh) package to automatically generate all-quadrilateral meshes with high order boundary information.
geometry high-order-methods mesh-generation
Last synced: 24 Aug 2026
https://github.com/TACC/launcher
A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job
batch-processing heterogeneous hpc launcher parametric-submission shell tacc xsede
Last synced: 24 Aug 2026
https://github.com/lumenlearning/rise
RISE Analysis in R
continuous-improvement learning-analytics open-educational-resources
Last synced: 24 Aug 2026
https://github.com/antoinediez/Sisyphe
Simulation of Systems of interacting mean-field Particles with High Efficiency
agent-based-model agent-based-simulation gpu mean-field particles self-organization swarming
Last synced: 24 Aug 2026
https://github.com/sp94/Peacock.jl
Photonic crystals in Julia 🦚
electromagnetic-simulation electromagnetics electromagnetism maxwell-equations maxwell-equations-solver photonic-crystals photonics physics plane-wave-expansion
Last synced: 24 Aug 2026
https://github.com/mathLab/BladeX
BladeX - Python Blade Morphing
blade hacktoberfest iges naca procal propeller
Last synced: 24 Aug 2026
https://github.com/mrempel/geohexviz
GeoHexViz - generating publication-quality geospatical visualization of hexagonally binned data
Last synced: 24 Aug 2026
https://github.com/kinisi-dev/kinisi
A Python package for estimating diffusion properties from molecular dynamics simulations.
diffusion molecular-dynamics python
Last synced: 24 Aug 2026
https://github.com/mikldk/DNAtools
Development version of the DNAtools R-package
Last synced: 24 Aug 2026
https://github.com/symmy596/Polypy
polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories
chemistry materials-science molecular-dynamics-simulation monte-carlo-simulation simulation solid-state-chemistry solid-state-physics
Last synced: 24 Aug 2026
https://github.com/enthought/vpsearch
Fast similarity search for genomic sequences via vantage-point trees
Last synced: 24 Aug 2026
https://github.com/PoisotLab/EcologicalNetworks.jl
Everything you've never dreamed about measuring on ecological networks.
ecology julia networks
Last synced: 24 Aug 2026
https://github.com/DrafProject/elmada
Dynamic electricity carbon emission factors and prices for Europe
carbon-emissions demand-response electricity-market electricity-prices energy-system-modeling marginal-emissions python
Last synced: 24 Aug 2026
https://github.com/RTDLM/TDLM
📦 Systematic comparison of trip distribution laws and models
r r-package
Last synced: 24 Aug 2026
https://github.com/diningphil/PyDGN/
A research library for automating experiments on Deep Graph Networks
deep-graph-networks deep-learning-for-graphs evaluation-framework
Last synced: 24 Aug 2026
https://github.com/mlysy/LocalCop
Local Likelihood Inference for Conditional Copulas
Last synced: 24 Aug 2026
https://github.com/CFSAN-Biostatistics/vcftoolz
Tools for working with Variant Call Format files.
Last synced: 24 Aug 2026
https://github.com/htjb/maxsmooth
Constrained Derivative Function Optimisation
astrophysics maths optimisation optimisation-algorithms physics science
Last synced: 24 Aug 2026
https://github.com/linksmart/thing-directory
Directory of Web of Things (WoT) Thing Descriptions. Maintained fork at https://github.com/TinyIoT/thing-directory
tdd thing-description thing-description-directory w3c web-of-things wot
Last synced: 24 Aug 2026
https://github.com/auggiemarignier/pxmcmc
Solving inverse problems with Proximal Markov Chain Monte Carlo
bayesian-inference inverse-problems mcmc proximal-algorithms python
Last synced: 24 Aug 2026
https://github.com/aadya940/chainopy
A Python Library for Discrete Time Markov Chain based stochastic analysis
bayesian-data-analysis bayesian-inference bayesian-statistics data-analysis data-science deep-learning forecasting machine-learning markov-chain markov-model markov-process time-series time-series-analysis
Last synced: 24 Aug 2026
https://github.com/JGCRI/stitches
Amalgamate existing climate data to create monthly climate variable fields.
Last synced: 24 Aug 2026
https://github.com/VChristiaens/special
Package for spectral characterization of (sub-)stellar objects
Last synced: 24 Aug 2026
https://github.com/elwinter/nnde
nnde is a package of Python modules which implement a set of neural networks which solve ordinary and partial differential equations. This code is based on the previous package, nnode.
Last synced: 24 Aug 2026
https://github.com/jorittmo/singcar
singcar: A package for statistically comparing single cases to normative controls
Last synced: 24 Aug 2026
https://github.com/BjoernBiltzinger/pyspi
Pure python tools for interfacing with INTEGRAL SPI data. It also provides a 3ML plugin for performing full forward folding spectral analysis of GRBs. The documentation with a few examples is available at https://pyspi.readthedocs.io/.
3ml python spi-data
Last synced: 24 Aug 2026
https://github.com/EhsanGharibNezhad/TelescopeML
Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra
astronomy atmospheric-modelling convolutional-neural-networks machine-learning star telescope
Last synced: 24 Aug 2026
https://gitlab.com/davidwoodburn/itrm
Interactive Terminal Utilities
ascii-art interactive plotting terminal
Last synced: 24 Aug 2026
https://github.com/embodied-computation-group/systole/
Systole: A python package for cardiac signal synchrony and analysis
biosignals bokeh electrocardiography heart-rate-variability hrv oximeter photoplethysmography physiological-signals ppg psychology-experiments psychophysiology
Last synced: 24 Aug 2026
https://github.com/Mat-dp/mat-dp-core
Mat-dp core cotains the key methods used in the broader Mat-dp model. Mat-dp aims to deliver user-friendly and open-access software to study the environmental implications of materials used for building low-carbon systems.
bulk-materials critical-materials embodied-emissions low-carbon-systems material-demand modelling-tool
Last synced: 24 Aug 2026
https://github.com/holgerteichgraeber/TimeSeriesClustering.jl
Julia implementation of unsupervised learning methods for time series datasets. It provides functionality for clustering and aggregating, detecting motifs, and quantifying similarity between time series datasets.
clustering energy-systems hierarchical-clustering julia k-means-clustering k-medoids-clustering optimization representative-days time-series-aggregation
Last synced: 24 Aug 2026
https://github.com/capstone-insper/drone-swarm-search
The Drone Swarm Search project provides an environment for SAR missions built on PettingZoo, where agents, represented by drones, are tasked with locating targets identified as shipwrecked individuals.
ai multi-agent-reinforcement-learning multiagent-reinforcement-learning pettingzoo pygame python rl
Last synced: 24 Aug 2026
https://github.com/ulissigroup/amptorch
AMPtorch: Atomistic Machine Learning Package (AMP) - PyTorch
Last synced: 24 Aug 2026
https://github.com/AP6YC/ClusterValidityIndices.jl
A Julia package for Cluster Validity Indices (CVIs).
clustering julia julia-language machine-learning
Last synced: 24 Aug 2026
https://github.com/VegeWaterDynamics/motrainer
Distributed Measurement Operator Trainer for Data Assimilation Applications
data-assimilation distributed-computing kalman-filter machine-learning
Last synced: 24 Aug 2026
https://github.com/edawson/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
genomics gfa graph-representation parsing
Last synced: 24 Aug 2026
https://github.com/quantum-exeter/SpiDy.jl
:spider: Non-Markovian stochastic SPIn (and harmonic oscillator) DYnamics.
harmonic-oscillator open-systems spin-dynamics stochastic
Last synced: 24 Aug 2026
https://github.com/adamantine-sim/adamantine
Software to simulate heat transfer for additive manufacturing
3d-printing heat-transfer simulation
Last synced: 24 Aug 2026
https://github.com/pyomeca/pyomeca/
Python toolbox for biomechanics analysis
biomechanics biomechanics-analysis dynamics kinematics kinetics python xarray
Last synced: 24 Aug 2026
https://github.com/lcpp-org/RustBCA
A free, open-source Binary Collision Approximation (BCA) code for ion-material interactions including sputtering, implantation, and reflection
bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping fusion implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura
Last synced: 24 Aug 2026
https://github.com/Romain-Thomas-Shef/dfitspy
FITS file header search and display
Last synced: 24 Aug 2026
https://github.com/ropensci/bikedata
:bike: Extract data from public hire bicycle systems
bicycle-hire bicycle-hire-systems bike-data bike-hire database peer-reviewed r r-package rstats
Last synced: 24 Aug 2026
https://github.com/rickhelmus/patRoon
Workflow solutions for mass-spectrometry based non-target analysis.
mass-spectrometry non-target r
Last synced: 24 Aug 2026
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- Last updated: over 1 year ago