JOSS: https://github.com/korem-lab/pymgpipe
cobra flux-balance-analysis metabolic-models metabolic-reconstruction mgpipe microbiome microbiome-modeling-toolbox modeling systems-biology
Score: 8.302017809751204
Last synced: about 9 hours ago
JSON representation
Repository metadata:
Python implementation of mgpipe
- Host: GitHub
- URL: https://github.com/korem-lab/pymgpipe
- Owner: korem-lab
- License: apache-2.0
- Created: 2022-08-17T00:33:01.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2023-10-09T22:36:10.000Z (over 2 years ago)
- Last Synced: 2026-06-10T16:04:23.891Z (12 days ago)
- Topics: cobra, flux-balance-analysis, metabolic-models, metabolic-reconstruction, mgpipe, microbiome, microbiome-modeling-toolbox, modeling, systems-biology
- Language: JetBrains MPS
- Homepage: https://korem-lab.github.io/pymgpipe/
- Size: 13.8 MB
- Stars: 7
- Watchers: 2
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata:
- Name: korem-lab
- Login: korem-lab
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/52986889?v=4
- Repositories: 1
- Last Synced at: 2023-04-27T19:22:07.987Z
- Profile URL: https://github.com/korem-lab
GitHub Events
Total
- Total: 0
Last Year
- Total: 0
Committers metadata
Last synced: 3 days ago
Total Commits: 450
Total Committers: 8
Avg Commits per committer: 56.25
Development Distribution Score (DDS): 0.144
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Yoli Meydan | y****7@c****u | 385 |
| github-actions[bot] | g****] | 25 |
| Yoli Meydan % Korem | y****7@l****c | 15 |
| Yoli Meydan % Korem | y****7@l****c | 11 |
| Yoli Meydan % Korem | y****7@l****c | 6 |
| Yoli Meydan % Korem | y****7@l****c | 5 |
| Tal Korem | 4****m | 2 |
| Yoli | y****1@g****m | 1 |
Issue and Pull Request metadata
Last synced: 12 days ago
Total issues: 3
Total pull requests: 4
Average time to close issues: 1 day
Average time to close pull requests: less than a minute
Total issue authors: 3
Total pull request authors: 1
Average comments per issue: 2.33
Average comments per pull request: 0.0
Merged pull request: 1
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- ammaraziz (1)
- cumbof (1)
- cdiener (1)
Top Pull Request Authors
- ym2877 (4)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 62 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
pypi.org: pymgpipe
Community level microbiome metabolic modeling in Python
- Homepage: https://github.com/korem-lab/pymgpipe
- Documentation: https://pymgpipe.readthedocs.io/
- Licenses: Apache-2.0
- Latest release: 0.16.10 (published almost 3 years ago)
- Last Synced: 2026-06-18T20:00:35.027Z (3 days ago)
- Versions: 5
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 62 Last month
-
Rankings:
- Dependent packages count: 7.481%
- Downloads: 9.699%
- Stargazers count: 28.082%
- Average: 29.036%
- Forks count: 30.19%
- Dependent repos count: 69.73%
- Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- peaceiris/actions-gh-pages v3 composite
- MishaKav/pytest-coverage-comment main composite
- actions-js/push master composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- rymndhng/release-on-push-action master composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- cobra ==0.26.3
- flake8 *
- gurobipy ==9.5.2
- matplotlib ==3.7.1
- numpy ==1.23.5
- optlang ==1.6.1
- pandas ==1.5.3
- pytest *
- pytest-cov *
- pytest_check *
- scikit_bio ==0.5.8
- scipy ==1.10.1
- seaborn ==0.12.2
- setuptools ==67.7.2
- sympy ==1.11.1
- tqdm ==4.65.0
- cobra *
- optlang *
- tqdm *