JOSS: https://github.com/althonos/pyrodigal/
bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd
Score: 7.064759027791801
Last synced: about 17 hours ago
JSON representation
Repository metadata:
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
- Host: GitHub
- URL: https://github.com/althonos/pyrodigal/
- Owner: althonos
- License: gpl-3.0
- Created: 2020-04-26T18:59:13.000Z (about 6 years ago)
- Default Branch: main
- Last Pushed: 2026-03-17T12:50:02.000Z (3 months ago)
- Last Synced: 2026-04-27T19:05:03.722Z (about 2 months ago)
- Topics: bioconda, bioinformatics, cython-wrapper, gene-finding, genome, metagenomes, orf-finder, prodigal, python, python-interface, python-library, simd
- Language: Cython
- Homepage: https://pyrodigal.readthedocs.org
- Size: 7.14 MB
- Stars: 182
- Watchers: 5
- Forks: 10
- Open Issues: 13
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: COPYING
- Citation: CITATION.cff
Owner metadata:
- Name: Martin Larralde
- Login: althonos
- Email:
- Kind: user
- Description: PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.
- Website:
- Location: Heidelberg, Germany
- Twitter: althonos
- Company: EMBL / LUMC, @zellerlab
- Icon url: https://avatars.githubusercontent.com/u/8660647?u=194fbf9846310fda8a9e9d1288993cc967e28ef9&v=4
- Repositories: 91
- Last Synced at: 2024-06-11T15:48:47.831Z
- Profile URL: https://github.com/althonos
GitHub Events
Total
- Create event: 6
- Delete event: 1
- Fork event: 6
- Issue comment event: 29
- Issues event: 17
- Pull request event: 5
- Push event: 47
- Release event: 6
- Watch event: 29
- Total: 146
Last Year
- Fork event: 2
- Issue comment event: 12
- Issues event: 7
- Pull request event: 2
- Push event: 5
- Release event: 2
- Watch event: 14
- Total: 44
Committers metadata
Last synced: about 2 months ago
Total Commits: 874
Total Committers: 6
Avg Commits per committer: 145.667
Development Distribution Score (DDS): 0.006
Commits in past year: 24
Committers in past year: 2
Avg Commits per committer in past year: 12.0
Development Distribution Score (DDS) in past year: 0.042
| Name | Commits | |
|---|---|---|
| Martin Larralde | m****e@e****e | 869 |
| cjprybol | c****l | 1 |
| Zak | 5****s | 1 |
| Stefaan Verwimp | 5****p | 1 |
| Arfon Smith | a****n | 1 |
| Antônio Camargo | a****o | 1 |
Issue and Pull Request metadata
Last synced: about 2 months ago
Total issues: 67
Total pull requests: 15
Average time to close issues: about 2 months
Average time to close pull requests: about 1 month
Total issue authors: 42
Total pull request authors: 8
Average comments per issue: 3.58
Average comments per pull request: 1.0
Merged pull request: 11
Bot issues: 0
Bot pull requests: 2
Past year issues: 9
Past year pull requests: 3
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 4 days
Past year issue authors: 6
Past year pull request authors: 2
Past year average comments per issue: 3.22
Past year average comments per pull request: 2.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- apcamargo (5)
- yurivict (5)
- oschwengers (4)
- jianshu93 (4)
- gbouras13 (3)
- pchaumeil (2)
- ericolo (2)
- althonos (2)
- aaronmussig (2)
- kbipinkumar (2)
- schorlton-bugseq (2)
- tseemann (2)
- KGerhardt (2)
- zdk123 (2)
- geronimp (1)
Top Pull Request Authors
- althonos (4)
- sverwimp (2)
- imgbot[bot] (2)
- zclaas (2)
- apcamargo (2)
- LanderDC (1)
- arfon (1)
- cjprybol (1)
Top Issue Labels
- bug (22)
- question (20)
- enhancement (10)
- external (6)
- build (5)
- good first issue (1)
- wontfix (1)
Top Pull Request Labels
- enhancement (3)
Dependencies
- KSXGitHub/github-actions-deploy-aur v2.2.5 composite
- actions-rs/toolchain v1 composite
- actions/checkout v3 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v3 composite
- actions/upload-artifact v2 composite
- docker/setup-qemu-action v2 composite
- pypa/cibuildwheel v2.11.3 composite
- pypa/gh-action-pypi-publish master composite
- rasmus-saks/release-a-changelog-action v1.0.1 composite
- actions/checkout v2 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- auditwheel <5.2
- codecov *
- coverage *
- cython *
- setuptools >=46.4.0
- wheel *
- matplotlib *
- numpy *
- palettable *
- scipy *
- tqdm *
- cython *
- ipython *
- nbsphinx *
- pygments *
- pygments-style-monokailight *
- recommonmark *
- semantic_version *
- setuptools >=46.4
- sphinx *
- archspec ~=0.2.0
- archspec * test
- importlib-resources * test