JOSS: https://github.com/Robaina/Pynteny
bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block
Score: 6.327936783729195
Last synced: about 13 hours ago
JSON representation
Repository metadata:
Query sequence database by HMMs arranged in predefined synteny structure
- Host: GitHub
- URL: https://github.com/Robaina/Pynteny
- Owner: Robaina
- License: apache-2.0
- Created: 2022-06-06T14:39:33.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2023-11-03T09:50:58.000Z (over 2 years ago)
- Last Synced: 2026-01-19T23:08:39.741Z (18 days ago)
- Topics: bioinformatics, computational-biology, genomics, hmm, hmmer, metagenomics, prokaryotic-genomes, python, synteny, synteny-block
- Language: Python
- Homepage: https://robaina.github.io/Pynteny
- Size: 22.1 MB
- Stars: 13
- Watchers: 1
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata:
- Name: Semidán Robaina
- Login: Robaina
- Email: semidan@oceanbiometrics.com
- Kind: user
- Description: Co-Founder @ Ocean BioMetrics AI & Computational Biology
- Website: https://oceanbiometrics.com
- Location: Atlantic Ocean
- Twitter: srobainae
- Company: Ocean BioMetrics
- Icon url: https://avatars.githubusercontent.com/u/21340147?u=3e2274c331241221b7fa2b234eecc41fcfa3bdc5&v=4
- Repositories: 12
- Last Synced at: 2025-10-27T15:56:16.822Z
- Profile URL: https://github.com/Robaina
GitHub Events
Total
- Issue comment event: 1
- Total: 1
Last Year
- Issue comment event: 1
- Total: 1
Committers metadata
Last synced: 4 days ago
Total Commits: 603
Total Committers: 2
Avg Commits per committer: 301.5
Development Distribution Score (DDS): 0.01
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Semidán Robaina Estévez | s****a@g****m | 597 |
| Alex Batisse | a****e@h****m | 6 |
Issue and Pull Request metadata
Last synced: 3 months ago
Total issues: 56
Total pull requests: 33
Average time to close issues: 20 days
Average time to close pull requests: 1 day
Total issue authors: 3
Total pull request authors: 2
Average comments per issue: 0.63
Average comments per pull request: 1.18
Merged pull request: 32
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: about 1 month
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 1.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- Robaina (54)
- kcw27 (1)
- wchow (1)
Top Pull Request Authors
- Robaina (32)
- Batalex (1)
Top Issue Labels
- enhancement (34)
- bug (8)
- refactor (8)
- code review (6)
- documentation (5)
- good first issue (1)
- invalid (1)
Top Pull Request Labels
- enhancement (9)
- refactor (9)
- code review (8)
- bug (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 20 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
pypi.org: pynteny
Multiple HMM - search via synteny structures in Python
- Homepage: http://github.com/robaina/Pynteny
- Documentation: https://pynteny.readthedocs.io/
- Licenses: Creative Commons Attribution 4.0 International
- Latest release: 0.0.2 (published over 3 years ago)
- Last Synced: 2024-12-08T05:05:07.556Z (about 1 year ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 20 Last month
-
Rankings:
- Dependent packages count: 4.842%
- Dependent repos count: 6.331%
- Downloads: 13.092%
- Average: 14.033%
- Stargazers count: 19.254%
- Forks count: 26.644%
Dependencies
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v3 composite
- actions/setup-python v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- actions/checkout v3 composite
- codecov/codecov-action v3 composite
- conda-incubator/setup-miniconda v2 composite
- mcr.microsoft.com/devcontainers/miniconda 0-3 build
- mcr.microsoft.com/devcontainers/miniconda 0-3 build
- python ^3.8