JOSS: https://github.com/Robaina/Pynteny
bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block
Score: 7.2640301428995295
Last synced: about 5 hours ago
JSON representation
Repository metadata:
Query sequence database by HMMs arranged in predefined synteny structure
- Host: GitHub
- URL: https://github.com/Robaina/Pynteny
- Owner: Robaina
- License: apache-2.0
- Created: 2022-06-06T14:39:33.000Z (about 4 years ago)
- Default Branch: main
- Last Pushed: 2026-06-23T09:24:41.000Z (about 2 months ago)
- Last Synced: 2026-07-25T18:06:52.641Z (22 days ago)
- Topics: bioinformatics, computational-biology, genomics, hmm, hmmer, metagenomics, prokaryotic-genomes, python, synteny, synteny-block
- Language: Python
- Homepage: https://robaina.github.io/Pynteny
- Size: 22.9 MB
- Stars: 20
- Watchers: 1
- Forks: 2
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata:
- Name: Semidán Robaina
- Login: Robaina
- Email: semidan@hapdera.com
- Kind: user
- Description: Founder @ Hapdera AI & Computational Biology
- Website: https://hapdera.com
- Location: Atlantic Ocean
- Twitter: srobainae
- Company: Hapdera
- Icon url: https://avatars.githubusercontent.com/u/21340147?u=094757da81476df3c54e1556963f9cb9b515f362&v=4
- Repositories: 12
- Last Synced at: 2026-08-15T08:55:37.588Z
- Profile URL: https://github.com/Robaina
GitHub Events
Total
- Create event: 2
- Delete event: 5
- Issue comment event: 1
- Push event: 10
- Total: 18
Last Year
- Create event: 2
- Delete event: 5
- Issue comment event: 1
- Push event: 10
- Total: 18
Committers metadata
Last synced: 1 day ago
Total Commits: 619
Total Committers: 2
Avg Commits per committer: 309.5
Development Distribution Score (DDS): 0.01
Commits in past year: 16
Committers in past year: 1
Avg Commits per committer in past year: 16.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Semidán Robaina Estévez | s****a@g****m | 613 |
| Alex Batisse | a****e@h****m | 6 |
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 59
Total pull requests: 41
Average time to close issues: 20 days
Average time to close pull requests: 1 day
Total issue authors: 4
Total pull request authors: 2
Average comments per issue: 0.63
Average comments per pull request: 0.95
Merged pull request: 40
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 8
Past year average time to close issues: 16 days
Past year average time to close pull requests: about 1 hour
Past year issue authors: 3
Past year pull request authors: 1
Past year average comments per issue: 0.75
Past year average comments per pull request: 0.0
Past year merged pull request: 8
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- Robaina (56)
- kcw27 (1)
- jolespin (1)
- wchow (1)
Top Pull Request Authors
- Robaina (40)
- Batalex (1)
Top Issue Labels
- enhancement (34)
- refactor (8)
- bug (8)
- code review (6)
- documentation (5)
- invalid (1)
- good first issue (1)
Top Pull Request Labels
- enhancement (9)
- refactor (9)
- code review (8)
- bug (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 33 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
pypi.org: pynteny
Synteny-aware hmm searches made easy in Python
- Homepage: https://github.com/robaina/Pynteny
- Documentation: https://robaina.github.io/Pynteny
- Licenses: Apache-2.0
- Latest release: 1.3.0 (published about 2 months ago)
- Last Synced: 2026-08-15T01:02:55.312Z (1 day ago)
- Versions: 3
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 33 Last month
-
Rankings:
- Dependent packages count: 4.842%
- Dependent repos count: 6.331%
- Downloads: 13.092%
- Average: 14.033%
- Stargazers count: 19.254%
- Forks count: 26.644%
- Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v3 composite
- actions/setup-python v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- actions/checkout v3 composite
- codecov/codecov-action v3 composite
- conda-incubator/setup-miniconda v2 composite
- mcr.microsoft.com/devcontainers/miniconda 0-3 build
- mcr.microsoft.com/devcontainers/miniconda 0-3 build
- python ^3.8