Ecosyste.ms: Summary

https://github.com/AliYoussef96/BCAW-Tool

BCAWT: Automated tool for codon usage bias analysis for molecular evolution

Last synced: 22 Aug 2026

https://github.com/UCBerkeleySETI/blimpy

Breakthrough Listen I/O Methods for Python

Last synced: 22 Aug 2026

https://github.com/Hazboun6/hasasia

Python package for calculating pulsar timing array sensitivity curves.

Last synced: 22 Aug 2026

https://github.com/paul-buerkner/thurstonianIRT

Fit Thurstonian IRT models in R using Stan, lavaan, or Mplus

Last synced: 22 Aug 2026

https://github.com/chand-lab/openEyeTrack

an open source multi-threaded eye tracker

Last synced: 22 Aug 2026

https://github.com/slithiaote/lepton

lepton is a automaton for literate executable papers

Last synced: 22 Aug 2026

https://github.com/kellykochanski/rescal-snow

A model of dunes and snow-waves

Last synced: 22 Aug 2026

https://github.com/ramaniitrgoyal92/Modeling_of_Tensegrity_Structures_MOTES

Modeling_of_Tensegrity_Structures(MOTES)

Last synced: 22 Aug 2026

https://github.com/kb-press/ndsplines/

Multi-dimensional B-splines

Last synced: 22 Aug 2026

https://github.com/JedS6391/LGP

A robust Linear Genetic Programming implementation on the JVM using Kotlin.

ai genetic-programming gp jvm kotlin lgp linear-genetic-programming machine-learning

Last synced: 22 Aug 2026

https://github.com/ai4os/DEEPaaS

A REST API to serve machine learning and deep learning models

aiohttp artificial-intelligence data-science deep-hybrid-datacloud deep-learning deepaas-api h2020 http machine-learning machinelearning neural-network neural-networks rest-api restful-api

Last synced: 22 Aug 2026

https://github.com/zfit/phasespace/

Phase space generation implemented in TensorFlow

hep physics-simulation

Last synced: 22 Aug 2026

https://github.com/TerrainBento/umami

Calculate topographic metrics for assessing model-data fit

Last synced: 22 Aug 2026

https://github.com/OttaviaE/DscoreApp

A Shiny Web Application for computing the IAT D-score

Last synced: 22 Aug 2026

https://github.com/stgl/pymccrgb

Multiscale curvature classification of point clouds with color features

classification-algorithm geomorphology lidar photogrammetry point-cloud supervised-learning

Last synced: 22 Aug 2026

https://github.com/ropensci/lightr

Import spectral data and related metadata in R

file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy

Last synced: 22 Aug 2026

https://github.com/ropensci/workloopR/

💪 Analysis of work loops and other data from muscle physiology experiments

ddf muscle-force muscle-physiology-experiments r r-package rstats tetanus work-loop workloop

Last synced: 22 Aug 2026

https://github.com/pyscal/pyscal

Python library written in C++ for calculation of local atomic structural environment

bond-order-parameters lammps molecular-dynamics nucleation order-parameters solid-state-physics steinhardt steinhardt-bond-order-parameters

Last synced: 22 Aug 2026

https://github.com/matt002/GaitPy

Last synced: 22 Aug 2026

https://gitlab.com/tesch1/cppduals

Fast dual number implementation for C++. Docs: https://tesch1.gitlab.io/cppduals

C++ ad automatic differentiation dual dual number eigen mathematics template library

Last synced: 22 Aug 2026

https://github.com/ModelOriented/modelStudio

📍 Interactive Studio for Explanatory Model Analysis

ai explainable explainable-ai explainable-machine-learning explanatory-model-analysis human iml interactive interactivity interpretability interpretable interpretable-machine-learning learning machine model model-visualization r visualization xai

Last synced: 22 Aug 2026

https://github.com/mrgprasad/kanapy

Synthetic microstructure generator. Online documentation:

ellipsoid-packing finite-element-analysis materials-science microstructure-generator

Last synced: 22 Aug 2026

https://github.com/jnoynaert/PressureDrop.jl

Package for computing pressure profiles for gas lift optimization of oil & gas wells.

Last synced: 22 Aug 2026

https://github.com/sambitdash/PDFIO.jl

PDF Reader Library for Native Julia.

julia pdf pdf-development pdf-document pdf-files pdf-library pdf-specification text-extraction

Last synced: 22 Aug 2026

https://github.com/ropensci/rnassqs

R interface for the USDA National Agricultural Statistical Service's (NASS) 'Quick Stats' API (https://quickstats.nass.usda.gov/api)

Last synced: 22 Aug 2026

https://github.com/MaciejDanko/hopit

Hierarchical Ordered Probit Models with Application to Reporting Heterogeneity

Last synced: 22 Aug 2026

https://github.com/dfm/emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

mcmc mcmc-sampler probabilistic-data-analysis python

Last synced: 22 Aug 2026

https://github.com/martinfleis/momepy

Urban Morphology Measuring Toolkit

Last synced: 22 Aug 2026

https://github.com/KaiWenger/memochange

An R package for identifying structural changes in time series.

Last synced: 22 Aug 2026

https://github.com/junbinzhao/FluxCalR/

This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multiple flux measurements from one data file.

carbon-flux chamber co2 flux-measurement lgr los-gatos methane ultraportable-gas-analyzers

Last synced: 22 Aug 2026

https://github.com/HypothesisWorks/hypothesis/

The property-based testing library for Python

fuzzing property-based-testing python testing

Last synced: 22 Aug 2026

https://github.com/MLHale/eyestream

This project time-synchronously integrates eye tracker data collected from a Gazepoint GP3 data with an experimentation platform API via websocket

Last synced: 22 Aug 2026

https://github.com/michellab/BioSimSpace

Code and resources for the EPSRC BioSimSpace project.

biomolecular-simulation ccpbiosim computational-biology computational-chemistry computational-physics interoperability molecular-dynamics reproducibility reproducible-research

Last synced: 22 Aug 2026

https://github.com/imr-framework/virtual-scanner

An end-to-end hybrid MR simulator/console

mri

Last synced: 22 Aug 2026

https://github.com/marouenbg/ACHR.cu

A GPU implementation of the sampling algorithm ACHR.

cuda metabolic-network parallel-computing sampling

Last synced: 22 Aug 2026

https://github.com/seanpue/graphtransliterator

A graph-based transliteration tool

Last synced: 22 Aug 2026

https://github.com/dmentipl/plonk

Smoothed particle hydrodynamics analysis and visualization with Python.

astronomy python smoothed-particle-hydrodynamics visualization

Last synced: 22 Aug 2026

https://github.com/paudetseis/Telewavesim

Teleseismic body wave modeling through stacks of (submarine/anisotropic) layers

anisotropy fortran geophysics modeling obs plane-waves python receiver-functions seismology sks

Last synced: 22 Aug 2026

https://github.com/tesselle/tabula

Analysis and Visualization of Archaeological Count Data - :exclamation: Moved to https://codeberg.org/tesselle/tabula

archaeological-science archaeology data-visualization r-package

Last synced: 22 Aug 2026

https://github.com/complexvariables/ComplexRegions.jl

(Julia) Package for working with curves and regions in the extended complex plane.

Last synced: 22 Aug 2026

https://github.com/data-edu/tidyLPA

Easily carry out Latent Profile Analysis (LPA) using open-source or commercial software

Last synced: 22 Aug 2026

https://gitlab.com/gdetor/genetic_alg

Last synced: 22 Aug 2026

https://github.com/ropensci/opentripplanner

An R package to set up and use OpenTripPlanner (OTP) as a local or remote multimodal trip planner.

data isochrones java opentripplanner otp public-transport r routing transport transportation-planning

Last synced: 22 Aug 2026

https://github.com/PhanstielLab/coralp

Flexible visualization of the human phosphatome

Last synced: 22 Aug 2026

https://github.com/mgdotdev/libRL

A Python library for characterizing Microwave Absorption

chemistry materials-science microwave-absorption umkc

Last synced: 22 Aug 2026

https://github.com/TrashBirdEcology/bbsAssistant/

An R package for downloading and handling data and information from the North American Breeding Bird Survey.

bbs-data birds breeding-bird-survey data-downloader ecology ornithology point-count usgs

Last synced: 22 Aug 2026

https://github.com/JonasMoss/univariateML

An R package for maximum likelihood estimation of univariate densities.

density estimation maximum-likelihood

Last synced: 22 Aug 2026

https://github.com/PhanstielLab/bedtoolsr

R package wrapping bedtools

Last synced: 22 Aug 2026

https://github.com/USCbiostats/xrnet

R Package for Hierarchical Regularized Regression to Incorporate External Data

Last synced: 22 Aug 2026

https://github.com/BouchardLab/pyuoi

The Union of Intersections Framework in Python

Last synced: 22 Aug 2026

https://github.com/alcantarar/dryft

Correcting drift in ground reaction force data during treadmill running

Last synced: 22 Aug 2026

https://github.com/cimentadaj/perccalc/

Estimate percentile differences from ordered categorical data

Last synced: 22 Aug 2026

https://github.com/lskatz/mashtree

:deciduous_tree: Create a tree using Mash distances

bioperl mash mash-distances tree

Last synced: 22 Aug 2026

https://github.com/mlr-org/mlr3

mlr3: Machine Learning in R - next generation

classification data-science machine-learning mlr3 r r-package regression

Last synced: 22 Aug 2026

https://github.com/jbloomlab/alignparse

Align sequences and then parse features.

Last synced: 22 Aug 2026

https://github.com/ImperialCollegeLondon/sharpy

Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code

aeroelasticity aeronautics simulation structural-dynamics structures wind-turbines

Last synced: 22 Aug 2026

https://github.com/0todd0000/mwarp1d

Manual one-dimensional data warping and nonlinear registration in Python and PyQt

Last synced: 22 Aug 2026

https://github.com/ytree-project/ytree

A Python package for analyzing tree data and especially merger trees.

analysis astronomy astrophysics data merger-trees python simulations trees

Last synced: 22 Aug 2026

https://github.com/mne-tools/mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

bids eeg electroencephalography ieeg magnetoencephalography meg mne neuroimaging neuroscience

Last synced: 22 Aug 2026

https://github.com/elyiorgos/sleeppy

Last synced: 22 Aug 2026

https://github.com/snowformatics/BlasterQt

Initial Import

Last synced: 22 Aug 2026

https://github.com/AMReX-Astro/MAESTROeX

A C++ low Mach number stellar hydrodynamics code

amrex astrophysical-simulation

Last synced: 22 Aug 2026

https://github.com/LRydin/KramersMoyal

kramersmoyal: Kramers-Moyal coefficients for stochastic data of any dimension, to any desired order

diffusion drift drift-diffusion kernel-density-estimation nadaraya-watson stochastic stochastic-differential-equations stochastic-process

Last synced: 22 Aug 2026

https://github.com/xanaduAI/thewalrus

A library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling.

algorithm combinatorics graphs matrix optimization physics quantum quantum-computing

Last synced: 22 Aug 2026

https://github.com/owlbarn/owl_ode/

Owl's Differential Equation Solvers

differential-equations engineering-computation ocaml ode ode-solver scientific-computing sundials

Last synced: 22 Aug 2026

https://github.com/TomasBeuzen/pybeach

A Python package for locating the dune toe on cross-shore beach profile transects.

Last synced: 22 Aug 2026

https://github.com/springer-math/Mathematics-of-Epidemics-on-Networks

Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 . Documentation for the software package is at https://epidemicsonnetworks.readthedocs.io/en/latest/

Last synced: 22 Aug 2026

https://github.com/ramiyaari/simode/

simode: R Package for statistical inference of ordinary differential equations using separable integral-matching

Last synced: 22 Aug 2026

https://github.com/Deech08/whampy

Python Package to Interact with, Visualize, and Analyze the Wisconsin H-Alpha Mapper - Sky Survey

Last synced: 22 Aug 2026

https://github.com/dfki-ric/phobos

An add-on for Blender allowing to create URDF, SDF and SMURF robot models in a WYSIWYG environment.

blender gazebo mars python robot sdformat smurf urdf

Last synced: 22 Aug 2026

https://gitlab.com/materials-modeling/wulffpack

[A package for Wulff constructions.](https://wulffpack.materialsmodeling.org)

Wullf construction atomic structure nanoparticles surface energy surfaces thermodynamics

Last synced: 22 Aug 2026

https://github.com/SwathiSheshadri/pose3d

3D reconstruction toolbox for behavior tracked with multiple cameras

Last synced: 22 Aug 2026

https://github.com/stfbnc/fathon

python package for DFA (Detrended Fluctuation Analysis) and related algorithms

dcca detrended-fluctuation-analysis dfa hurst-exponent mfdfa multifractal-analysis multifractal-detrended-fluctuation multifractal-spectrum python scientific-software

Last synced: 22 Aug 2026

https://gitlab.com/myqueue/myqueue

SLURM/PBS/LSF frontend

Last synced: 22 Aug 2026

https://github.com/WyLyu/UPOsHam

UPOsHam is a Python package for computing unstable periodic orbits in two degrees of freedom Hamiltonian systems

Last synced: 22 Aug 2026

https://github.com/vitorsr/SIHR

Fast/non-data-aided single image highlight removal methods in MATLAB/GNU Octave

computer-vision image-processing machine-intelligence pattern-analysis

Last synced: 22 Aug 2026

https://github.com/wingtorres/morphometrix

A PyQt5 Gui for photogrammetry and morphometry

Last synced: 22 Aug 2026

https://github.com/larq/larq

An Open-Source Library for Training Binarized Neural Networks

binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow

Last synced: 22 Aug 2026

https://github.com/JonasKemmer/AliasFinder

A Python tool for alias testing

Last synced: 22 Aug 2026

https://github.com/HybriD3-database/MatD3

Curatable database for experimental and theoretical data on solid materials.

Last synced: 22 Aug 2026

https://github.com/gyorilab/adeft

Tool for disambiguating acronyms and abbreviations in text for NLP applications

acronym-disambiguation

Last synced: 22 Aug 2026

https://github.com/mikldk/DNAtools

Development version of the DNAtools R-package

Last synced: 22 Aug 2026

https://github.com/fatiando/pooch

A friend to fetch your data files

data download-manager fatiando-a-terra ftp http python python3 scipy scipy-stack

Last synced: 22 Aug 2026

https://github.com/VarIr/scikit-hubness/

A Python package for hubness analysis and high-dimensional data mining

approximate-nearest-neighbor-search data-mining data-science high-dimensional-data hubness machine-learning nearest-neighbor-search

Last synced: 22 Aug 2026

https://github.com/distant-viewing/dvt

Distant Viewing Toolkit for the Analysis of Visual Culture

computer-vision cultural-analytics digital-humanities

Last synced: 22 Aug 2026

https://github.com/ropensci/refsplitr

R package for processing, organizing, and visualizing reference records downloaded from the Web of Science.

Last synced: 22 Aug 2026

https://github.com/mbdemoraes/moafs

MOAFS: A Massive Online Analysis library for feature selection in data streams

Last synced: 22 Aug 2026

https://github.com/ropensci-archive/outsider

:warning: ARCHIVED :warning: Install and run programs, outside of R, inside of R

docker reproducibility rstats

Last synced: 22 Aug 2026

https://bitbucket.org/likask/mofem-cephas

MoFEM-Cephas is a next stage MoFEM development. It is stripped from unnecessary or obsolete implementation. The objective is to have an implementation which rich abstraction (able to implement nontrivial finite elements) while being small and extendable.

Last synced: 22 Aug 2026