JOSS: https://github.com/oschwengers/referenceseeker
ani bioinformatics mash microbiology reference-genomes refseq wgs
Score: 8.264878262801748
Last synced: about 5 hours ago
JSON representation
Repository metadata:
Rapid determination of appropriate reference genomes.
- Host: GitHub
- URL: https://github.com/oschwengers/referenceseeker
- Owner: oschwengers
- License: gpl-3.0
- Created: 2018-11-01T13:11:49.000Z (over 7 years ago)
- Default Branch: main
- Last Pushed: 2025-01-22T11:20:55.000Z (over 1 year ago)
- Last Synced: 2026-04-19T23:37:56.142Z (2 months ago)
- Topics: ani, bioinformatics, mash, microbiology, reference-genomes, refseq, wgs
- Language: Python
- Homepage: https://doi.org/10.21105/joss.01994
- Size: 19.7 MB
- Stars: 101
- Watchers: 5
- Forks: 7
- Open Issues: 4
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata:
- Name: Oliver Schwengers
- Login: oschwengers
- Email:
- Kind: user
- Description: Microbial bioinformatics, WGS bacteria, plasmids, PostDoc, father of 2, husband, astrophotographer
- Website:
- Location: Giessen, Germany
- Twitter: oschwengers1
- Company: @ag-computational-bio - JLU Giessen
- Icon url: https://avatars.githubusercontent.com/u/10071818?u=70601c2f650648ea543a07d6d3a4b9f82e6b116f&v=4
- Repositories: 6
- Last Synced at: 2023-03-02T06:40:25.969Z
- Profile URL: https://github.com/oschwengers
GitHub Events
Total
- Issue comment event: 2
- Issues event: 3
- Push event: 2
- Watch event: 9
- Total: 16
Last Year
- Issue comment event: 2
- Issues event: 3
- Push event: 2
- Watch event: 8
- Total: 15
Committers metadata
Last synced: 7 months ago
Total Commits: 222
Total Committers: 1
Avg Commits per committer: 222.0
Development Distribution Score (DDS): 0.0
Commits in past year: 5
Committers in past year: 1
Avg Commits per committer in past year: 5.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Oliver Schwengers | o****s@c****e | 222 |
Issue and Pull Request metadata
Last synced: 7 months ago
Total issues: 27
Total pull requests: 4
Average time to close issues: 8 days
Average time to close pull requests: 1 day
Total issue authors: 15
Total pull request authors: 2
Average comments per issue: 2.67
Average comments per pull request: 1.75
Merged pull request: 3
Bot issues: 0
Bot pull requests: 0
Past year issues: 2
Past year pull requests: 0
Past year average time to close issues: 2 days
Past year average time to close pull requests: N/A
Past year issue authors: 2
Past year pull request authors: 0
Past year average comments per issue: 0.5
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- standage (4)
- oschwengers (4)
- Rob-murphys (4)
- MostafaYA (3)
- natir (2)
- drelo (1)
- Jwebster89 (1)
- erelior (1)
- samlhao (1)
- augustkx (1)
- nick-youngblut (1)
- GuilhemRoyer (1)
- theo-llewellyn (1)
- padbc (1)
- Benjamin-Lee (1)
Top Pull Request Authors
- oschwengers (3)
- standage (1)
Top Issue Labels
- enhancement (8)
- bug (6)
- help wanted (3)
- question (1)
Top Pull Request Labels
- enhancement (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 35 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 12
- Total maintainers: 1
pypi.org: referenceseeker
ReferenceSeeker: rapid determination of appropriate reference genomes.
- Homepage: https://github.com/oschwengers/referenceseeker
- Documentation: https://referenceseeker.readthedocs.io/
- Licenses: GPLv3
- Latest release: 1.8.0 (published over 4 years ago)
- Last Synced: 2025-12-03T21:01:21.353Z (7 months ago)
- Versions: 12
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 35 Last month
-
Rankings:
- Stargazers count: 7.582%
- Dependent packages count: 10.044%
- Forks count: 14.195%
- Average: 17.942%
- Dependent repos count: 21.651%
- Downloads: 36.237%
- Maintainers (1)
Dependencies
- biopython *
- xopen *
- actions/checkout v2 composite
- conda-incubator/setup-miniconda v2 composite
- actions/checkout v2 composite
- actions/setup-python v1 composite
- actions/checkout v2 composite
- actions/setup-python v1 composite
- pypa/gh-action-pypi-publish master composite
- biopython >=1.78
- mash >=2.3.0
- mummer4 >=4.0.0beta2
- xopen >=1.1.0