https://github.com/matbesancon/BilevelOptimization.jl
JuMP-based toolbox for solving bilevel optimization problems
bilevel-optimization bilevel-problem complementarity-constraints julia julialang jump mathematical-programming optimization
Last synced: 22 Aug 2026
https://github.com/Amalan-ConStat/R-fitODBOD
R package developing version of fitODBOD version 1.4.1
binomial-distribution overdispersion
Last synced: 22 Aug 2026
https://github.com/fsobral/RAFF.jl
Robust Algebraic Fitting Function project
julia-package lower-order-value-optimization model-adjustment optimization-algorithms
Last synced: 22 Aug 2026
https://github.com/ropensci/cde
Repo for R package to query and download WFD data from the EA Catchment Data Explorer site
Last synced: 22 Aug 2026
https://github.com/xoolive/traffic
A toolbox for processing and analysing air traffic data
adsb air-traffic-data data-analytics data-science data-visualisation declarative-pipeline mode-s trajectory
Last synced: 22 Aug 2026
https://github.com/NBISweden/GUESSmyLT
An efficient way to guess the library type of your RNA-Seq data.
guesser library orientation rna-seq standed
Last synced: 22 Aug 2026
https://github.com/hainegroup/oceanspy
A Python package to facilitate ocean model data analysis and visualization.
ocean oceanography physical-oceanography
Last synced: 22 Aug 2026
https://bitbucket.org/basicsums/basicsums
The basicsums package provides an object-oriented programming interface for computing basic sums.
Last synced: 22 Aug 2026
https://github.com/USCbiostats/slurmR
slurmR: A Lightweight Wrapper for Slurm
bioinformatics hpc rpackage rstats slurm
Last synced: 22 Aug 2026
https://github.com/USCbiostats/fmcmc
A friendly MCMC framework
adaptive bayesian-inference markov-chain-monte-carlo mcmc metropolis-hastings parallel-computing r r-package
Last synced: 22 Aug 2026
https://github.com/Boyle-Lab/CGIMP
Clustered Genomic Interval Mapping Platform
Last synced: 22 Aug 2026
https://github.com/olivertomic/hoggorm
Explorative multivariate statistics in Python
chemometrics explorative-statistics multivariate-analysis multivariate-statistics partial-least-squares-regression principal-component-analysis statistics
Last synced: 22 Aug 2026
https://github.com/ECRL/ecabc
Artificial bee colony optimizer for user-defined parametric fitness functions
artificial-bee-colony feature-tuning hyperparameter-optimization neural-network
Last synced: 22 Aug 2026
https://github.com/IBT-FMI/COSplay/
Contrast Optimized Stimulation player
bids biomedical optogenetics sensory-stimulation stimulus-presentation trigger-events
Last synced: 22 Aug 2026
https://github.com/stumpy-dev/stumpy
STUMPY is a powerful and scalable Python library for modern time series analysis
anomaly-detection dask data-science matrix-profile motif-discovery numba pattern-matching pydata python time-series-analysis time-series-data-mining time-series-segmentation
Last synced: 22 Aug 2026
https://github.com/xin-huang/SeleDiff
A fast and scalable tool for estimating and testing selection differences between populations
natural-selection population-genomics selective-pressures
Last synced: 22 Aug 2026
https://github.com/nvihrs14/tcherry
This R-package is for learning the structure of the type of graphical models called t-cherry trees from data. The structure is determined either directly from data or by increasing the order of a lower order t-cherry tree.
chow-liu-tree graphical-models junction-tree markov-networks structure-learning t-cherry-tree undirected-graph variable-dependence
Last synced: 22 Aug 2026
https://github.com/emsig/emg3d
A multigrid solver for 3D electromagnetic diffusion
csem electromagnetic geophysics modelling multigrid python
Last synced: 22 Aug 2026
https://gitlab.com/users/sign_in
Custom ROS packages for prototyping with [Toposens](http://toposens.com/) 3D ultrasound sensors. Supported for Noetic, Melodic and Kinetic with [TS3](http://toposens.com/ts3) hardware.
open source robotics ros
Last synced: 22 Aug 2026
https://github.com/Geodels/bioLEC
Landscape Elevational Connectivity package https://biolec.readthedocs.io/
Last synced: 22 Aug 2026
https://github.com/zhangning737/rdbsp
Dynamic rock behaviour simulation program
Last synced: 22 Aug 2026
https://github.com/mmhs013/pyMannKendall
A python package for non parametric Mann Kendall family of trend tests.
mann-kendall-tests mk-test modified-mann-kendall-test python seasonal-mann-kendall trend-analysis
Last synced: 22 Aug 2026
https://github.com/big-data-lab-team/OrpailleCC
A consistent collection of data stream algorithms for embedded systems
Last synced: 22 Aug 2026
https://github.com/pierrepo/autoclasswrapper
AutoClassWrapper: a Python :snake: wrapper for AutoClass C classification :package: :rocket:
Last synced: 22 Aug 2026
https://github.com/vivo-project/VIVO
VIVO is an extensible semantic web application for research discovery and showcasing scholarly work
Last synced: 22 Aug 2026
https://github.com/brmather/pycurious
Python package for computing the Curie depth from the magnetic anomaly
bayesian-inference curie-depth magnetic-anomaly magnetism python
Last synced: 22 Aug 2026
https://github.com/terrytangyuan/lfda/
Local Fisher Discriminant Analysis in R
dimensionality-reduction distance-metric-learning machine-learning metric-learning r statistics
Last synced: 22 Aug 2026
https://github.com/silvandeleemput/memcnn
PyTorch Framework for Developing Memory Efficient Deep Invertible Networks
deep-learning machine-learning python3 pytorch
Last synced: 22 Aug 2026
https://github.com/fcdimitr/sgtsnepi
Swift Neighbor Embedding of Sparse Stochastic Graphs
Last synced: 22 Aug 2026
https://github.com/urmi-21/ORIS
ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes
bioinformatics dna-replication gc-skew oris replication-origin
Last synced: 22 Aug 2026
https://github.com/bii-absd/tims
TIMS (Translation Informatics Management System) is an software effort by the ABSD (Analytics of Biological Sequence Data) team in the Bioinformatics Institute (BII), Agency of Science, Technology and Research (A*STAR), Singapore.
Last synced: 22 Aug 2026
https://github.com/camdavidsonpilon/lifelines
Survival analysis in Python
cox-regression data-science maximum-likelihood python reliability-analysis statistics survival-analysis
Last synced: 22 Aug 2026
https://github.com/ropensci/UCSCXenaTools
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
api-client bioinformatics ccle downloader icgc r tcga toil treehouse ucsc ucsc-xena
Last synced: 22 Aug 2026
https://github.com/beringresearch/ivis
Dimensionality reduction in very large datasets using Siamese Networks
data-visualization dimensionality-reduction machine-learning neural-network siamese-neural-network
Last synced: 22 Aug 2026
https://github.com/ryanstwrt/FRIDGe
This repository is for the Fast Reactor Input Deck Generator (FRIDGe)
Last synced: 22 Aug 2026
https://gitlab.com/dlr-dw/ontocode
Python package for ontology-to-code transformation
Last synced: 22 Aug 2026
https://github.com/CROSSINGTUD/bc-hybrid-certificates
Java implementation of hybrid certificates using BouncyCastle
Last synced: 22 Aug 2026
https://github.com/greta-dev/greta
simple and scalable statistical modelling in R
Last synced: 22 Aug 2026
https://github.com/bids-standard/pybids
Python tools for querying and manipulating BIDS datasets.
api bids python
Last synced: 22 Aug 2026
https://github.com/dblarremore/webweb
MATLAB and Python + d3js. Webweb is a tool for creating interactive visualizations of networks on the web.
Last synced: 22 Aug 2026
https://github.com/pankajkmishra/NodeLab
NodeLab is a simple MATLAB-repository for node-generation and adaptive refinement for testing, and implementing various meshfree methods (including physics-informed neural networks, PINNs and DeepOnet) for solving PDEs in arbitrary domains.
deeponet fno meshfree-solver physics-informed-neural-networks
Last synced: 22 Aug 2026
https://github.com/adswa/multimatch_gaze
Reimplementation of Matlabs MultiMatch toolbox (Dewhurst et al., 2012) in Python
Last synced: 22 Aug 2026
https://github.com/bihealth/altamisa
AltamISA: a Python API for ISA-Tab files
bioinformatics isa isa-tab
Last synced: 22 Aug 2026
https://github.com/sunpy/drms
Access HMI, AIA and MDI data with Python from public JSOC DRMS servers
Last synced: 22 Aug 2026
https://github.com/Merck/rtdpy
Residence Time Distribution modeling in Python.
process-development python residence-time-distribution
Last synced: 22 Aug 2026
https://github.com/frycast/studentlife
Tidy handling and navigation of the valuable Student-Life mHealth dataset
Last synced: 22 Aug 2026
https://github.com/o2r-project/containerit/
Package an R workspace and all dependencies as a Docker container
docker dockerfile r reproducible-research reproducible-science
Last synced: 22 Aug 2026
https://github.com/fauvernierma/survPen
hazard and excess hazard modelling with multidimensional penalized splines
Last synced: 22 Aug 2026
https://github.com/jlustigy/coronagraph
A Python noise model for directly imaging exoplanets
astronomy coronagraph exoplanets spectroscopy
Last synced: 22 Aug 2026
https://github.com/dap-biospec/KinESim
Igor Pro package for simulation of homogeneous and heterogeneous electrochemical reactions
Last synced: 22 Aug 2026
https://gitlab.com/eidheim/Simple-Web-Server
A very simple, fast, multithreaded, platform independent HTTP and HTTPS server and client library implemented using C++11 and Boost.Asio. Created to be an easy way to make REST resources available from C++ applications.
Last synced: 22 Aug 2026
https://github.com/singularityhub/singularity-compose
orchestration for singularity containers (under development)
container-orchestration singularity singularity-compose
Last synced: 22 Aug 2026
https://github.com/Samsung/mTower
mTower is Trusted Execution Environment specially designed to be used on MicroController Units (MCUs) supporting ARM TrustZone technology (e.g., Cortex-M23/33/35p). mTower operates well under restrictions typical for such environment – small RAM and ROM sizes, relatively low performance, absence of rich OSes providing variety of services available on PCs or in enterprise environments. mTower is intended for usage in IoT, embedded devices, Smart Home applications, distributed heterogeneous networks and other environments where secure processing of sensitive data is necessary.
bootloader cortex-m23 freertos gcc iot m2351 makefile microcontroller numaker-pfm-m2351 nuvoton risc-v secure smarthome trusted-execution-environment trustzone
Last synced: 22 Aug 2026
https://github.com/dap-biospec/G3F
G3F: Global, Multidimensional Spectral Regression Analysis
Last synced: 22 Aug 2026
https://github.com/ShanaScogin/modeLLtest
An R Package for tests comparing cross validated log likelihood (CVLL) estimates
Last synced: 22 Aug 2026
https://github.com/profjsb/deepCR
Deep Learning Based Cosmic Ray Removal for Astronomical Images
astronomical-images astronomy convolutional-neural-networks deep-learning python3 pytorch
Last synced: 22 Aug 2026
https://github.com/Cavenfish/autogamess
This is a python module for automating Raman calculations using GAMESS(us).
Last synced: 22 Aug 2026
https://github.com/maxibor/sourcepredict
Prediction/source tracking of metagenomic samples source using machine learning
machine-learning microbiome source-tracking
Last synced: 22 Aug 2026
https://github.com/daya6489/SmartEDA
a R package for data exploratory analysis
analysis exploratory-data-analysis
Last synced: 22 Aug 2026
https://github.com/CLINDA-AAU/ccostr
An R package, ccostr, which calculates estimates of mean cost given censored data
Last synced: 22 Aug 2026
https://github.com/holgerteichgraeber/TimeSeriesClustering.jl
Julia implementation of unsupervised learning methods for time series datasets. It provides functionality for clustering and aggregating, detecting motifs, and quantifying similarity between time series datasets.
clustering energy-systems hierarchical-clustering julia k-means-clustering k-medoids-clustering optimization representative-days time-series-aggregation
Last synced: 22 Aug 2026
https://github.com/Niemeyer-Research-Group/pyMARS
Python-based (chemical kinetic) Model Automatic Reduction Software
Last synced: 22 Aug 2026
https://github.com/sigsep/open-unmix-paper-joss
Repository for the open-unmix JOSS submission
Last synced: 22 Aug 2026
https://github.com/livioivil/TextWiller
Collection of functions for text mining, specially devoted to the italian language
Last synced: 22 Aug 2026
https://github.com/WRF-CMake/WRF
🌀 The Weather Research and Forecasting (WRF) model with CMake support
atmospheric-modelling atmospheric-science cmake fortran grib hpc hpc-applications linux macos meteorology netcdf numerical-modelling nwp research scientific-computations scientific-computing weather weather-forecast windows wrf
Last synced: 22 Aug 2026
https://github.com/PlanetFormationLab/gofish
🎣 Fish for line detections by exploiting the known velocity structure of the disk.
Last synced: 22 Aug 2026
https://github.com/martibosch/swisslandstats-geopy
Python tools for preprocessing geodata from the Swiss Federal Statistical Office
Last synced: 22 Aug 2026
https://github.com/RuthAngus/stardate
Combining dating methods for better stellar ages
age-rotation-relations ages astronomy astrophysics bayesian field-stars gyrochronology hierarchical inference isochrone-fitting isochrones mcmc rotation stars stellar stellar-ages stellar-parameters stellar-rotation
Last synced: 22 Aug 2026
https://github.com/HBClab/NiBetaSeries
Nipype implementation of BetaSeries Correlations (Beta)
Last synced: 22 Aug 2026
https://github.com/giorginolab/vmd_diffusion_coefficient
Computing Diffusion Coefficients in Macromolecular Simulations: The Diffusion Coefficient Tool for VMD
Last synced: 22 Aug 2026
https://github.com/haptork/csaransh
Study, Explore and Visualize Collision Cascades
Last synced: 22 Aug 2026
https://github.com/AnabelSMRuggiero/sbmltoodepy
A tool for creating Python implementations of SBML models.
Last synced: 22 Aug 2026
https://github.com/pySRURGS/pySRURGS
Symbolic regression by uniform random global search
binary-tree enumeration python python3 random symbolic-regression
Last synced: 22 Aug 2026
https://github.com/JuliaRheology/RHEOS.jl
RHEOS - Open Source Rheology data analysis software
biomechanics engineering fractional materials-science rheology viscoelastic
Last synced: 22 Aug 2026
https://github.com/finsberg/pulse
A software for solving problems in cardiac mechanics
Last synced: 22 Aug 2026
https://github.com/manaakiwhenua/virtualNicheR
virtualNicheR: creating virtual fundamental and realised niches
biogeography ecological-niche-modelling ecological-simulations ecology niche niche-modelling r virtual-ecology
Last synced: 22 Aug 2026
https://github.com/lisc-tools/lisc
Literature Scanner: Automated collection & analyses of the scientific literature.
literature-mining literature-review meta-analysis scientific-publications text-mining web-scraping
Last synced: 22 Aug 2026
https://github.com/anderson-cu-bioastronautics/dynamo_realsense-capture
A Python library with tools for capturing body shape and marker tracking with Intel RealSense D4XX Cameras
Last synced: 22 Aug 2026
https://github.com/engnadeau/pybotics
The Python Toolbox for Robotics
calibration doi dynamics hacktoberfest impedance-control inverse-kinematics kinematics math mathematics numpy pypi python python-toolbox research robot robotics scipy trajectory
Last synced: 22 Aug 2026
https://github.com/CosmiQ/CometTS
Comet Time Series Toolset for working with a time-series of remote sensing imagery and user defined polygons
Last synced: 22 Aug 2026
https://github.com/benmaier/netwulf
Interactive visualization of networks based on Ulf Aslak's d3 web app.
d3 network-visualization networkx python
Last synced: 22 Aug 2026
https://github.com/duetosymmetry/qnm
Python package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients
black-holes general-relativity numerical-methods physics python scientific-computing
Last synced: 22 Aug 2026
https://github.com/heilerich/neurone_loader
Python module for loading EEG data recorded with Bittium NeurOne (formerly MegaEMG)
Last synced: 22 Aug 2026
https://github.com/enzo-project/enzo-dev
The Enzo adaptive mesh-refinement simulation code.
Last synced: 22 Aug 2026
https://github.com/JonasMoss/kdensity
An R package for kernel density estimation with parametric starts and asymmetric kernels.
asymmetric-kernels density-estimation kernel-density-estimation non-parametric
Last synced: 22 Aug 2026
https://github.com/Cohere-Labs-Community/rl
Generic reinforcement learning codebase in TensorFlow
machine-learning reinforcement-learning rl tensorflow
Last synced: 22 Aug 2026
https://github.com/GeoStat-Framework/pentapy
A Python toolbox for pentadiagonal linear systems
linear-algebra linear-systems math matrix pentadiagonal-linear-systems python solvers toolbox
Last synced: 22 Aug 2026
https://github.com/kavir1698/Agents.jl
Agent-based modeling framework in Julia
Last synced: 22 Aug 2026
https://github.com/r-cas/ryacas
Ryacas: R Interface to the Yacas Computer Algebra System
Last synced: 22 Aug 2026
https://github.com/PolymerGuy/AXITOM
Axisymmetric recontruction of tomography data acquired by a conical beam
Last synced: 22 Aug 2026
https://github.com/mlindsk/molic
Multivariate Outlierdetection In Contingency Tables
categorical-data contingency-tables decomposable-graphical-models high-dimensional-data outlier-detection
Last synced: 22 Aug 2026
https://github.com/giorginolab/plumed2-pycv/
PYCV module for PLUMED2. See the src/pycv directory.
Last synced: 22 Aug 2026
https://github.com/pulseq/pypulseq
Pulseq in Python
mri mri-sequences pulse-sequences pulseq python
Last synced: 22 Aug 2026
https://github.com/scikit-tda/kepler-mapper
Kepler Mapper: A flexible Python implementation of the Mapper algorithm.
data-visualization hacktoberfest kepler-mapper mapper-algorithm python tda topological-data-analysis visualization
Last synced: 22 Aug 2026
https://github.com/knaidoo29/mistree
A python package for constructing and analysing minimum spanning trees.
cosmology graph-theory levy-walks minimum-spanning-tree minimum-spanning-trees python random-walk
Last synced: 22 Aug 2026
https://github.com/shah314/gamultiknapsack
GKNAP: A Java and C++ package for solving the multidimensional knapsack problem
c-plus-plus genetic-algorithm java knapsack-problem knapsack-solver multiconstraint-knapsack multidimensional-knapsack multidimensional-knapsack-problem
Last synced: 22 Aug 2026
