Ecosyste.ms: Summary

https://github.com/siravan/fib_tf

electrophysiology ode-solver pde tensorflow

Last synced: 22 Aug 2026

https://github.com/mikldk/disclapmix

Discrete Laplace Mixture Inference using the EM Algorithm

Last synced: 22 Aug 2026

https://github.com/jrbourbeau/pyunfold

Iterative unfolding for Python

data-analysis deconvolution inverse-problems python regularization statistics unfolding

Last synced: 22 Aug 2026

https://github.com/octapps/octapps

Library of Octave functions for continuous gravitational-wave data analysis

Last synced: 22 Aug 2026

https://github.com/drostlab/philentropy

Information Theory and Distance Quantification with R

distance-measures distance-quantification information-theory jensen-shannon-divergence parametric-distributions r similarity-measures statistics

Last synced: 22 Aug 2026

https://github.com/SMTG-Bham/galore

Gaussian and Lorentzian smearing of simulated spectra

Last synced: 22 Aug 2026

https://github.com/edoddridge/aronnax

An idealised isopycnal model that can be run either with n+1/2 layers, or with n layers and variable bathymetry.

Last synced: 22 Aug 2026

https://github.com/mirzaevinom/egtplot

egtplot: A python package for 3-Strategy Evolutionary Games

dynamical-systems evolutionary-game-theory game-theory visualization

Last synced: 22 Aug 2026

https://github.com/UniNE-CHYN/mmappickle

Python 3 library to store memory mappable objects into pickle-compatible files

dictionary memory mmap python python-3 python-library python3

Last synced: 22 Aug 2026

https://github.com/j-faria/kima

Exoplanet detection in RVs with DNest4 and GPs

bayesian exoplanets gaussian-processes hacktoberfest radial-velocity

Last synced: 22 Aug 2026

https://github.com/strengejacke/sjmisc

Data transformation and utility functions for R

data-transformation data-wrangling labelled-data r recoding

Last synced: 22 Aug 2026

https://github.com/vsoch/helpme

command line daemon for helping you out

command-line containers docker github helper research-tool singularity uservoice

Last synced: 22 Aug 2026

https://github.com/ellessenne/rsimsum/

Analysis of simulation studies including Monte Carlo error

biostatistics monte-carlo-error r rstats simulation simulation-study simulations statistics

Last synced: 22 Aug 2026

https://github.com/spinicist/QUIT

A set of tools for processing Quantitative MR Images

Last synced: 22 Aug 2026

https://github.com/HPAC/matchpy

A library for pattern matching on symbolic expressions in Python.

pattern-matching python symbolic-expressions term-rewriting

Last synced: 22 Aug 2026

https://github.com/jfjlaros/bin-parser

General binary file parser.

binary json parser yaml

Last synced: 22 Aug 2026

https://github.com/ryneches/SuchTree

A Python library for fast, thread-safe computations on phylogenetic trees

Last synced: 22 Aug 2026

https://github.com/ropensci/phylogram

Dendrograms for Evolutionary Analysis

peer-reviewed r r-package rstats

Last synced: 22 Aug 2026

https://github.com/resibots/limbo

A lightweight framework for Gaussian processes and Bayesian optimization of black-box functions (C++11)

bayesian-optimization gaussian-processes optimization-framework optimization-library

Last synced: 22 Aug 2026

https://github.com/giuseppec/iml

iml: interpretable machine learning R package

Last synced: 22 Aug 2026

https://github.com/gregreen/dustmaps

A uniform interface for a number of 2D and 3D maps of interstellar dust reddening/extinction.

Last synced: 22 Aug 2026

https://github.com/dhhagan/py-opc

Python wrapper for the Alphasense OPC-N2 built around py-spidev

Last synced: 22 Aug 2026

https://github.com/dgasmith/opt_einsum

⚡️Optimizing einsum functions in NumPy, Tensorflow, Dask, and more with contraction order optimization.

contraction einsum gpu-acceleration performance python tensor tensor-contraction

Last synced: 22 Aug 2026

https://github.com/strengejacke/ggeffects

Estimated Marginal Means and Marginal Effects from Regression Models for ggplot2

estimated-marginal-means hacktoberfest marginal-effects prediction

Last synced: 22 Aug 2026

https://github.com/ashleefv/BeeNestABM

Agent-based model of spatiotemporal distribution of bumblebees in nests

Last synced: 22 Aug 2026

https://github.com/lebebr01/pdfsearch

Search pdf files for keywords.

keyword pdf r

Last synced: 22 Aug 2026

https://github.com/salabim/salabim

salabim - discrete event simulation

animation discrete-event-simulation logistics python

Last synced: 22 Aug 2026

https://github.com/IFB-ElixirFr/edam-browser

Former location of edam-browser

Last synced: 22 Aug 2026

https://github.com/ECSIM/opem

OPEM (Open Source PEM Fuel Cell Simulation Tool)

chemistry dynamic-analysis electrochemistry fuel-cell opem pem physics physics-simulation python script simulation simulator static-analysis static-analyzer

Last synced: 22 Aug 2026

https://github.com/cylc/cylc-flow

Cylc: a general purpose workflow engine with a gift for cycling

cycling-workflows cylc job-scheduler metascheduler python scheduler scheduling workflow workflow-automation workflow-engine workflow-management

Last synced: 22 Aug 2026

https://github.com/astorfi/speechpy

:speech_balloon: SpeechPy - A Library for Speech Processing and Recognition: http://speechpy.readthedocs.io/en/latest/

feature-extraction python speech-recognition speechpy

Last synced: 22 Aug 2026

https://github.com/ropensci/nomisr

Access UK official statistics from the Nomis database through R.

api-client census-data demography geographic-data national-statistics official-statistics officialstatistics peer-reviewed r r-package rstats uk

Last synced: 22 Aug 2026

https://github.com/robwschlegel/heatwaveR

This GitHub repo contains all of the code for the heatwaveR package.

Last synced: 22 Aug 2026

https://gitlab.com/costrouc/pysrim

Last synced: 22 Aug 2026

https://github.com/momargoh/MCycle

A Python package for 1D sizing and analysis of thermodynamic power cycles

heat-exchanger heat-transfer power-cycle thermodynamics thermodynamics-models

Last synced: 22 Aug 2026

https://github.com/nismod/ukpopulation

Population and demographics projection module, developed for ITRC/MISTRAL

demographics population

Last synced: 22 Aug 2026

https://github.com/Frost-group/PolaronMobility.jl

Feynman's variational path-integral model for the Fröhlich polaron. Calculates temperature dependent polaron mobilities, and other polaron observables.

mobility path-integral physics polarons solid-state

Last synced: 22 Aug 2026

https://github.com/andrewthomasjones/logKDE

Kernel Density Estimates on (0,Inf)

Last synced: 22 Aug 2026

https://github.com/pdwaggoner/hhi

Calculate and Visualize Herfindahl-Hirschman Index Scores

Last synced: 22 Aug 2026

https://github.com/SMTG-Bham/sumo

Heavyweight plotting tools for ab initio calculations

computational-chemistry materials-science plotting python

Last synced: 22 Aug 2026

https://github.com/lucydot/effmass

Calculates various definitions of effective mass from the electronic bandstructure of a semiconductor.

Last synced: 22 Aug 2026

https://github.com/ropensci-archive/jstor

:warning: ARCHIVED :warning: Import journal data from DfR (JSTOR)

jstor peer-reviewed r r-package rstats text-analysis text-mining

Last synced: 22 Aug 2026

https://github.com/lumenlearning/rise

RISE Analysis in R

continuous-improvement learning-analytics open-educational-resources

Last synced: 22 Aug 2026

https://github.com/tdaverse/TDAstats

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

cran data-science ggplot2 homology homology-calculations homology-computation joss persistent-homology pipeline r r-package r-packages ripser tda topological-data-analysis topology topology-visualization visualization

Last synced: 22 Aug 2026

https://github.com/betteridiot/bamnostic

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

Last synced: 22 Aug 2026

https://github.com/JohnCoene/sigmajs

Σ sigma.js for R

htmlwidgets network-visualization r rstats sigmajs

Last synced: 22 Aug 2026

https://github.com/williamsbenjamin/blendR

Blending a Probablilty Sample and a Non-Probability Sample in a Capture-Recapture Setting

Last synced: 22 Aug 2026

https://github.com/yt-project/unyt

Handle, manipulate, and convert data with units in Python

Last synced: 22 Aug 2026

https://github.com/sdtaylor/pyPhenology

Plant phenology models in python with a scikit-learn inspired API

ecology ecology-modelling plants science

Last synced: 22 Aug 2026

https://github.com/j-andrews7/Genotify

A minimal desktop app for easy and convenient gene annotation and lookup.

bioinformatics desktop-application gene gene-annotation genetics lookup protein-function

Last synced: 22 Aug 2026

https://github.com/loftytopping/PyBox

A box-model that automatically creates and solves equations used to describe the evolution in atmospheric composition using Python with Numba and, optionally, Fortran.

atmospheric-science chemistry fortran numba

Last synced: 22 Aug 2026

https://github.com/bmorris3/aesop

ARC Echelle Spectroscopic Observation Pipeline (aesop)

astronomy python spectroscopy

Last synced: 22 Aug 2026

https://gitlab.com/moorepants/skijumpdesign

A ski jump design tool for equivalent fall height. Includes a library for 2D skiing simulations and a graphical web application for designing ski jumps.

design jump simulation ski snowboard sports terrain park

Last synced: 22 Aug 2026

https://github.com/steven-murray/powerbox

A python package for making arbitrarily structured, arbitrary-dimension boxes

Last synced: 22 Aug 2026

https://github.com/emptyport/js-emass

This is a JavaScript implementation of the emass algorithm for calculating accurate isotopic envelopes

Last synced: 22 Aug 2026

https://github.com/gallantlab/cottoncandy

sugar for s3

cloud-storage google-drive numpy-arrays python s3

Last synced: 22 Aug 2026

https://github.com/MonashBioinformaticsPlatform/RNAsik-pipe

RNAsik - more than just a pipeline

Last synced: 22 Aug 2026

https://github.com/dirmeier/datastructures

:rocket: Implementation of core data structures for R

algorithms datastructures r rcpp

Last synced: 22 Aug 2026

https://github.com/pdebuyl-lab/tidynamics

A tiny package to compute the dynamics of stochastic and molecular simulations

correlation molecular-dynamics numpy stochastic-process

Last synced: 22 Aug 2026

https://github.com/handley-lab/fgivenx

Functional Posterior Plotter

astrophysics astrostatistics bayesian-inference cosmology matplotlib plotting statistics

Last synced: 22 Aug 2026

https://github.com/federeghe/chronovise

Measurement-Based Probabilistic Timing Analysis framework

mbpta real-time research-tool wcet

Last synced: 22 Aug 2026

https://github.com/davidnsousa/bor

Data analysis for field behavior observations of dyadic social interactions

Last synced: 22 Aug 2026

https://github.com/palash1992/GEM

graph-embedding graph-embeddings link-prediction network-embedding network-visualization

Last synced: 22 Aug 2026

https://github.com/lmcinnes/umap

Uniform Manifold Approximation and Projection

dimensionality-reduction machine-learning topological-data-analysis umap visualization

Last synced: 22 Aug 2026

https://github.com/dflemin3/approxposterior

A Python package for approximate Bayesian inference and optimization using Gaussian processes

approximate-inference bayesian-inference bayesian-optimization gaussian-processes inference python

Last synced: 22 Aug 2026

https://github.com/jcmgray/quimb

A python library for quantum information and many-body calculations including tensor networks.

dmrg entanglement mera peps physics python python3 quantum quantum-circuit quantum-circuit-simulator quantum-computing tebd tensor-network tensor-networks tensors

Last synced: 22 Aug 2026

https://github.com/python-windrose/windrose/

A Python Matplotlib, Numpy library to manage wind data, draw windrose (also known as a polar rose plot), draw probability density function and fit Weibull distribution

matplotlib numpy pandas python speed wind windrose

Last synced: 22 Aug 2026

https://github.com/calliope-project/calliope

A multi-scale energy systems modelling framework

energy energy-system optimisation pyomo python

Last synced: 22 Aug 2026

https://github.com/scikit-tda/ripser.py

A Lean Persistent Homology Library for Python

data-science homology persistent-homology ripser tda topological-data-analysis topology

Last synced: 22 Aug 2026

https://github.com/ejhigson/nestcheck

Error analysis, diagnostic tests and plots for nested sampling calculations.

bayesian-inference dynamic-nested-sampling error-analysis nested-sampling python sampling-error

Last synced: 22 Aug 2026

https://github.com/scikit-beam/NeuNorm

Normalization of fits and tiff files

Last synced: 22 Aug 2026

https://github.com/mpascariu/ungroup

Estimating Smooth Distributions from Coarsely Binned Data - R Package

distributions glm smoothing ungrouping

Last synced: 22 Aug 2026

https://github.com/grg2rsr/SeqPeelSort

A spike sorting algorithm for single sensillum recordings

Last synced: 22 Aug 2026

https://github.com/oekosheri/GB_code

A grain boundary generation code

crystallography grain-boundaries high-throughput-computing linear-algebra python

Last synced: 22 Aug 2026

https://github.com/boyanangelov/sdmbench

Benchmarking Species Distribution Models

benchmarking ecology machine-learning r sdm

Last synced: 22 Aug 2026

https://github.com/ejhigson/dyPolyChord

Super fast dynamic nested sampling with PolyChord (Python, C++ and Fortran likelihoods).

dynamic-nested-sampling nested-sampling

Last synced: 22 Aug 2026

https://github.com/dghoshal-lbl/madats

Last synced: 22 Aug 2026

https://github.com/raamana/graynet

Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)

anatomical-mri cortical-network cortical-thickness feature-extraction freesurfer graph gray-matter machine-learning mindboggle network-analysis neuroimaging neuroscience structural-mri thickness vbm voxel-based

Last synced: 22 Aug 2026

https://github.com/degauss-org/DeGAUSS

Decentralized Geomarker Assessment for Multi-Site Studies

Last synced: 22 Aug 2026

https://github.com/ejhigson/perfectns

"Perfect" dynamic and standard nested sampling for spherically symmetric likelihoods and priors.

bayesian-inference dynamic-nested-sampling nested-sampling pure-python

Last synced: 22 Aug 2026

https://github.com/volfpeter/localclustering

Python 3 implementation and documentation of the Hermina-Janos local graph clustering algorithm.

cluster cluster-analysis clustering clustering-algorithm graph-algorithms graph-theory hierarchical-clustering local-clustering python python3 ranking social-network-analysis

Last synced: 22 Aug 2026

https://github.com/Benjamin-Lee/CodonAdaptationIndex

Python Implementation of Codon Adaption Index

bioinformatics codons genetics

Last synced: 22 Aug 2026

https://github.com/quanteda/quanteda

An R package for the Quantitative Analysis of Textual Data

corpus natural-language-processing quanteda r text-analytics

Last synced: 22 Aug 2026

https://github.com/atmoschem/EmissV

Create and processing emissions for numeric air quality models

atmos atmospheric-chemistry atmospheric-modelling atmospheric-models atmospheric-science emissions wrf-chem

Last synced: 22 Aug 2026

https://github.com/stulacy/multistateutils

Utility funtions for parametric multi-state modelling in R

Last synced: 22 Aug 2026

https://github.com/raamana/mrivis

medical image visualization library and development toolkit

alignment checkerboard comparison mismatch mri neuroimaging neuroscience quality-control registration similarity visualization

Last synced: 22 Aug 2026

https://github.com/drvinceknight/Nashpy

A python library for 2 player games.

algorithm computer-science equilibria game mathematics nash python

Last synced: 22 Aug 2026

https://github.com/fatiando/verde

Processing and gridding spatial data, machine-learning style

earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack

Last synced: 22 Aug 2026

https://github.com/whimian/pyGeoPressure

Pore pressure prediction using seismic velocity and well log data

formation-pressure geomechancis geophysics geopressure pore-pressure-prediction

Last synced: 22 Aug 2026

https://github.com/schalkdaniel/compboost

C++ implementation and R API for componentwise boosting

boosting-framework interpretable-machine-learning machine-learning

Last synced: 22 Aug 2026

https://github.com/cmendl/pytenet

Python implementation of quantum tensor network operations and simulations: matrix product states and operators, TDVP time evolution, support for quantum numbers, ...

Last synced: 22 Aug 2026