JOSS: https://github.com/ryneches/SuchTree
Score: 9.7721252343393
Last synced: about 21 hours ago
JSON representation
Repository metadata:
A Python library for fast, thread-safe computations on phylogenetic trees
- Host: GitHub
- URL: https://github.com/ryneches/SuchTree
- Owner: ryneches
- License: bsd-3-clause
- Created: 2016-05-04T06:09:27.000Z (over 10 years ago)
- Default Branch: main
- Last Pushed: 2026-02-19T12:58:01.000Z (6 months ago)
- Last Synced: 2026-07-30T15:12:03.843Z (21 days ago)
- Language: Jupyter Notebook
- Homepage:
- Size: 29.5 MB
- Stars: 30
- Watchers: 2
- Forks: 6
- Open Issues: 7
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
- Codemeta: codemeta.json
CodeMeta metadata:
- @context: https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld
- @type: Code
- Author:
- @id: http://orcid.org/0000-0002-2055-8381
- @type: Person
- Email: russell@vort.org
- Name: Russell Neches
- Affiliation: U.C. Davis Genome Center
- @id: http://orcid.org/0000-0001-8822-8779
- @type: Person
- Email: cswel@ucdavis.edu
- Name: Camille Scott
- Affiliation: U.C. Davis Graduate Group in Computer Science
- Identifier: https://doi.org/10.5281/zenodo.1212627
- Code repository: https://github.com/ryneches/SuchTree/
- Date published: 2018-04-04
- Date modified: 2018-04-04
- Date created: 2018-04-04
- Description: A Python library for fast, thread-safe computations on phylogenetic trees
- Keywords: phylogenetics, python, coevolution, graph theory
- License: BSD-3
- Title: SuchTree
- Version: 0.6
Owner metadata:
- Name: Russell Neches
- Login: ryneches
- Email: git@vort.org
- Kind: user
- Description: Assistant professor at Kyoto University: Evolution & ecology of viruses & microbes with a side of graph theory & machine learning. Open( Access, Science, Data )
- Website: http://vort.org
- Location: 京都府
- Twitter:
- Company: Kyoto University
- Icon url: https://avatars.githubusercontent.com/u/440383?u=84888b5902bec02262cd72e4b96a71b2831d9d61&v=4
- Repositories: 103
- Last Synced at: 2026-08-13T07:36:23.898Z
- Profile URL: https://github.com/ryneches
GitHub Events
Total
- Create event: 2
- Issue comment event: 2
- Issues event: 1
- Push event: 38
- Release event: 2
- Watch event: 2
- Total: 47
Last Year
- Create event: 1
- Issue comment event: 2
- Issues event: 1
- Push event: 27
- Release event: 1
- Total: 32
Committers metadata
Last synced: 2 days ago
Total Commits: 411
Total Committers: 6
Avg Commits per committer: 68.5
Development Distribution Score (DDS): 0.304
Commits in past year: 83
Committers in past year: 2
Avg Commits per committer in past year: 41.5
Development Distribution Score (DDS) in past year: 0.253
| Name | Commits | |
|---|---|---|
| Russell Neches | r****l@v****g | 286 |
| Russell Neches | g****t@v****g | 117 |
| Camille Scott | c****w@g****m | 4 |
| James Gerity | s****i@g****m | 2 |
| Matthew Andres Moreno | m****n@g****m | 1 |
| Arfon Smith | a****n | 1 |
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 20
Total pull requests: 9
Average time to close issues: about 3 years
Average time to close pull requests: 4 days
Total issue authors: 6
Total pull request authors: 5
Average comments per issue: 0.6
Average comments per pull request: 0.44
Merged pull request: 9
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: about 1 month
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 2.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- ryneches (15)
- Mass23 (1)
- weirdlobster (1)
- apcamargo (1)
- cboettig (1)
- mmore500 (1)
Top Pull Request Authors
- camillescott (3)
- SnoopJ (2)
- ryneches (2)
- mmore500 (1)
- arfon (1)
Top Issue Labels
- enhancement (5)
- build (2)
- question (1)
- bug (1)
- release (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 77 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 10
- Total maintainers: 1
pypi.org: suchtree
A python library for doing fast, thread-safe computations on phylogenetic trees
- Homepage: https://github.com/ryneches/SuchTree
- Documentation: https://suchtree.readthedocs.io/
- Licenses: BSD-3-Clause
- Latest release: 1.3 (published 11 months ago)
- Last Synced: 2026-08-19T05:01:36.193Z (2 days ago)
- Versions: 10
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 77 Last month
-
Rankings:
- Dependent packages count: 10.141%
- Stargazers count: 12.069%
- Forks count: 14.234%
- Average: 15.841%
- Downloads: 21.234%
- Dependent repos count: 21.526%
- Maintainers (1)
Dependencies
- cython *
- dendropy *
- numpy *
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- pypa/cibuildwheel v2.18.0 composite
- actions/checkout v4 composite
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