CodonAdaptationIndex

bioinformatics codons genetics

Score: 10.741773498762312

Last synced: about 6 hours ago
JSON representation

Repository metadata:

Python Implementation of Codon Adaption Index

Host: GitHub
URL: https://github.com/Benjamin-Lee/CodonAdaptationIndex
Owner: Benjamin-Lee
License: mit
Created: 2017-08-14T06:51:48.000Z (almost 9 years ago)
Default Branch: master
Last Pushed: 2023-02-01T17:57:12.000Z (over 3 years ago)
Last Synced: 2026-01-23T09:26:45.372Z (5 months ago)
Topics: bioinformatics, codons, genetics
Language: Jupyter Notebook
Homepage: https://cai.readthedocs.io
Size: 34.8 MB
Stars: 37
Watchers: 3
Forks: 11
Open Issues: 10
Metadata Files:
- Readme: README.md
- License: LICENSE.txt

Owner metadata:

Name: Benjamin Lee
Login: Benjamin-Lee
Email:
Kind: user
Description: NIH-OxCam scholar at @ncbi & DPhil student at Oxford. Previously @Harvard CS '20 and @IQTLabs
Website: benjamindlee.com/about
Location: Tysons, VA
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/13618205?u=da62ac6d9e8067acbed91adb69ed19d2886a9a4a&v=4
Repositories: 10
Last Synced at: 2023-02-27T05:05:13.878Z
Profile URL: https://github.com/Benjamin-Lee

GitHub Events

Total

Fork event: 2
Issue comment event: 1
Pull request event: 1
Watch event: 3
Total: 7

Last Year

Fork event: 1
Watch event: 2
Total: 3

Committers metadata

Last synced: 5 months ago

Total Commits: 111
Total Committers: 3
Avg Commits per committer: 37.0
Development Distribution Score (DDS): 0.153

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
Benjamin Lee	b**e@m**m	94
BjornFJohansson	b**b@g**m	16
C. Titus Brown	t**s@i**g	1

Issue and Pull Request metadata

Last synced: 6 months ago

Total issues: 12
Total pull requests: 7
Average time to close issues: 3 months
Average time to close pull requests: 4 months
Total issue authors: 9
Total pull request authors: 5
Average comments per issue: 2.08
Average comments per pull request: 0.57
Merged pull request: 2
Bot issues: 1
Bot pull requests: 1

Past year issues: 1
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 2
Past year average comments per issue: 1.0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/Benjamin-Lee/CodonAdaptationIndex

Top Issue Authors

BjornFJohansson (3)
ctb (2)
lalalagartija (1)
jrjhealey (1)
ante-turudic (1)
dependabot-preview[bot] (1)
celiosantosjr (1)
HarryMWinters (1)
Benjamin-Lee (1)

Top Pull Request Authors

BjornFJohansson (2)
cjwatson (2)
ctb (1)
ewallace (1)
renovate[bot] (1)

Top Issue Labels

enhancement (1)
bug (1)

Top Pull Request Labels

Package metadata

Total packages: 1
Total downloads:
- pypi: 302 last-month
Total docker downloads: 21
Total dependent packages: 0
Total dependent repositories: 1
Total versions: 7
Total maintainers: 1

pypi.org: cai

Python implementation of codon adaptation index

Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
Documentation: https://cai.readthedocs.io/
Licenses: MIT
Latest release: 1.0.3 (published over 7 years ago)
Last Synced: 2026-01-11T15:43:00.017Z (5 months ago)
Versions: 7
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 302 Last month
Docker Downloads: 21
Rankings:
- Docker downloads count: 3.459%
- Dependent packages count: 9.995%
- Stargazers count: 12.025%
- Average: 12.731%
- Forks count: 13.31%
- Downloads: 15.87%
- Dependent repos count: 21.728%
Maintainers (1)
- Benjamin-Lee

Dependencies

docs/requirements.txt pypi

sphinxcontrib-programoutput *

requirements.txt pypi

biopython >=1.79
click >=7
scipy >=1.7.1

.github/workflows/conda_build_workflow.yml__ actions

actions/cache v2 composite
actions/checkout v2 composite
conda-incubator/setup-miniconda v2 composite

.github/workflows/setuptools_build_workflow.yml actions

actions/cache v2 composite
actions/checkout v2 composite
conda-incubator/setup-miniconda v2 composite
pypa/gh-action-pypi-publish master composite

.github/workflows/test_and_coverage_workflow.yml actions

actions/cache v2 composite
actions/checkout v2 composite
allenevans/set-env v2.0.0 composite
conda-incubator/setup-miniconda v2 composite

ecosyste.ms

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