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JOSS: https://github.com/Benjamin-Lee/CodonAdaptationIndex

bioinformatics codons genetics

Score: 11.345689545594315

Last synced: about 20 hours ago
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Repository metadata:

Python Implementation of Codon Adaption Index


Owner metadata:


GitHub Events

Total
Last Year

Committers metadata

Last synced: 5 days ago

Total Commits: 111
Total Committers: 3
Avg Commits per committer: 37.0
Development Distribution Score (DDS): 0.153

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name Email Commits
Benjamin Lee b****e@m****m 94
BjornFJohansson b****b@g****m 16
C. Titus Brown t****s@i****g 1

Issue and Pull Request metadata

Last synced: 10 days ago

Total issues: 12
Total pull requests: 7
Average time to close issues: 3 months
Average time to close pull requests: 4 months
Total issue authors: 9
Total pull request authors: 5
Average comments per issue: 2.08
Average comments per pull request: 0.57
Merged pull request: 2
Bot issues: 1
Bot pull requests: 1

Past year issues: 1
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 2
Past year average comments per issue: 1.0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/Benjamin-Lee/CodonAdaptationIndex

Top Issue Authors

  • BjornFJohansson (3)
  • ctb (2)
  • lalalagartija (1)
  • jrjhealey (1)
  • ante-turudic (1)
  • dependabot-preview[bot] (1)
  • celiosantosjr (1)
  • HarryMWinters (1)
  • Benjamin-Lee (1)

Top Pull Request Authors

  • BjornFJohansson (2)
  • cjwatson (2)
  • ctb (1)
  • ewallace (1)
  • renovate[bot] (1)

Top Issue Labels

  • enhancement (1)
  • bug (1)

Top Pull Request Labels


Package metadata

pypi.org: cai

Python implementation of codon adaptation index

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Documentation: https://cai.readthedocs.io/
  • Licenses: MIT
  • Latest release: 1.0.3 (published almost 8 years ago)
  • Last Synced: 2026-08-13T05:33:53.265Z (3 days ago)
  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 574 Last month
  • Docker Downloads: 21
  • Rankings:
    • Docker downloads count: 3.459%
    • Dependent packages count: 9.995%
    • Stargazers count: 12.025%
    • Average: 12.731%
    • Forks count: 13.31%
    • Downloads: 15.87%
    • Dependent repos count: 21.728%
  • Maintainers (1)
debian-12: python-cai

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Documentation: https://packages.debian.org/bookworm/python-cai
  • Licenses:
  • Latest release: 1.0.2-4 (published 6 months ago)
  • Last Synced: 2026-03-13T14:44:04.956Z (5 months ago)
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 0.0%
    • Dependent packages count: 0.0%
    • Average: 100%
ubuntu-23.10: python-cai

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Licenses:
  • Latest release: 1.0.2-4 (published 6 months ago)
  • Last Synced: 2026-03-14T00:17:22.960Z (5 months ago)
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 0.0%
    • Dependent packages count: 0.0%
    • Average: 100%
debian-13: python-cai

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Documentation: https://packages.debian.org/trixie/python-cai
  • Licenses:
  • Latest release: 1.0.4-1 (published 6 months ago)
  • Last Synced: 2026-03-14T09:02:08.131Z (5 months ago)
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 0.0%
    • Dependent packages count: 0.0%
    • Average: 100%
ubuntu-23.04: python-cai

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Licenses:
  • Latest release: 1.0.2-4 (published 6 months ago)
  • Last Synced: 2026-07-28T22:02:39.766Z (18 days ago)
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 0.0%
    • Dependent packages count: 0.0%
    • Average: 100%
ubuntu-24.10: python-cai

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Licenses:
  • Latest release: 1.0.2-4 (published 6 months ago)
  • Last Synced: 2026-03-09T12:04:04.848Z (5 months ago)
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 0.0%
    • Dependent packages count: 0.0%
    • Average: 100%
ubuntu-24.04: python-cai

  • Homepage: https://github.com/Benjamin-Lee/CodonAdaptationIndex
  • Licenses:
  • Latest release: 1.0.2-4 (published 6 months ago)
  • Last Synced: 2026-03-06T11:03:29.513Z (5 months ago)
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:

Dependencies

docs/requirements.txt pypi
  • sphinxcontrib-programoutput *
requirements.txt pypi
  • biopython >=1.79
  • click >=7
  • scipy >=1.7.1
.github/workflows/conda_build_workflow.yml__ actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • conda-incubator/setup-miniconda v2 composite
.github/workflows/setuptools_build_workflow.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • conda-incubator/setup-miniconda v2 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/test_and_coverage_workflow.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • allenevans/set-env v2.0.0 composite
  • conda-incubator/setup-miniconda v2 composite