https://github.com/MLMI2-CSSI/foundry
Simplifying the discovery and usage of machine-learning ready datasets in materials science and chemistry
chemistry data-science datasets machine-learning materials-science
Last synced: 22 Aug 2026
https://github.com/pyroll-project/pyroll-core
PyRoll rolling simulation framework - core library.
groove-rolling materials metal-forming pyroll python rolling simulation
Last synced: 22 Aug 2026
https://github.com/matthias-mayr/Cartesian-Impedance-Controller
A C++ implementation of Cartesian impedance control for torque-controlled manipulators with ROS 2 & 1 bindings.
compliant-control franka-emika franka-panda gazebo iiwa kuka-iiwa kuka-lbr-iiwa manipulators robotics ros
Last synced: 22 Aug 2026
https://github.com/sonoUnoTeam/sonoUno-desktop
SonoUno is a sonification software for astronomical data presented on a table (txt or csv files). The software is being developed based on the study of other software, standards of accessibility like the ISO 9241-171:2008 (Guidance on software accessibility) and theoretical framework based on literature review and end user tests.
Last synced: 22 Aug 2026
https://github.com/RECeSS-EU-Project/stanscofi/
Package for STANdard drug Screening by COllaborative FIltering. Performs benchmarks against datasets and SotA algorithms, and implements training, validation and testing procedures.
collaborative-filtering drug-repurposing open-science python science-reproducibility
Last synced: 22 Aug 2026
https://github.com/libAtoms/matscipy
Materials science with Python at the atomic-scale
Last synced: 22 Aug 2026
https://github.com/soft-matter-theory-at-icmab-csic/chitin_builder
Chitin builder: A code to build chitin atomistic structures in Visual Molecular Dynamics (VMD)
chitin md vmd
Last synced: 22 Aug 2026
https://github.com/misken/hillmaker
Occupancy analysis by time of day and day of week, with Python
Last synced: 22 Aug 2026
https://github.com/mpl-extensions/mpl-interactions
Sliders to control matplotlib and other interactive goodies. Works in any interactive backend and even uses ipywidgets when in a Jupyter notebook
ipympl jupyter jupyter-widgets jupyterlab matplotlib python
Last synced: 22 Aug 2026
https://github.com/tdep-developers/tdep
The Temperature Dependent Effective Potentials (TDEP) code
Last synced: 22 Aug 2026
https://github.com/alejandrojuria/tightbinder
General purpose Slater-Koster tight-binding library for electronic structure calculations
alloys band-structure condensed-matter-physics dft-fit disorder electronic-structure physics python simulation slater-koster solid-state-physics tight-binding topology
Last synced: 22 Aug 2026
https://github.com/pprachas/fenics_arclength
A Riks arclength solver implemented in FEniCS
fenics finite-element-analysis finite-element-method numerical-continuation python solid-mechanics-codes
Last synced: 22 Aug 2026
https://github.com/jbferet/prospect
R package for the simulation of leaf optical properties based on their biochemical and biophysical properties using the PROSPECT leaf model. A tutorial can be found on the gitlab website
leaf leaf-traits physical-modeling prospect spectroscopy
Last synced: 22 Aug 2026
https://github.com/CODES-group/opyrability
Python-based Process Operability Package
Last synced: 22 Aug 2026
https://github.com/demonico85/cleaving
Lammps Package for cleaving calculations USER-PACKAGE
Last synced: 22 Aug 2026
https://github.com/Mmasoud1/HistoJS
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
cell-cell-interaction cell-segmentation digital-slide-archive image-processing mibiscope multichannel multiplexed-imaging multiplexed-imaging-analysis ome-tiff phenotyping proteomics proteomics-data-analysis single-cell spatial-biology spatial-data-analysis whole-slide-imaging
Last synced: 22 Aug 2026
https://github.com/DavAug/chi
Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).
bayesian-inference mipd model-informed-precision-dosing nlme non-linear-mixed-effects parameter-estimation pharmacodynamics pharmacokinetics pkpd pkpd-modelling python
Last synced: 22 Aug 2026
https://gitlab.com/tum-ciip/elsa
elsa - an elegant framework for tomographic reconstruction
Last synced: 22 Aug 2026
https://gitlab.com/tue-umphy/software/parmesan
**P**ython **A**tmospheric **R**esearch package for **ME**teorological Time**S**eries and Turbulence **AN**alysis
analysis data gas meteorology python
Last synced: 22 Aug 2026
https://github.com/lskatz/fasten
:construction_worker: Fasten toolkit, for streaming operations on fastq files
bioinformatics fastq-files rust
Last synced: 22 Aug 2026
https://github.com/czimm79/MicroTracker.jl
Microbot tracking and analysis with Julia.
Last synced: 22 Aug 2026
https://github.com/WMD-group/PyTASER
Python package to simulate differential absorption spectra of crystals from first principles
computational-chemistry materials-science semiconductor-physics solar-fuel spectroscopy
Last synced: 22 Aug 2026
https://github.com/idaholab/moose
Multiphysics Object Oriented Simulation Environment
amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation
Last synced: 22 Aug 2026
https://github.com/kuadrat/growR
R implementation of the grassland model ModVege.
agronomy grass grassland modelling simulation-modeling
Last synced: 22 Aug 2026
https://github.com/cremerlab/hplc-py
A Python utility for the processing and quantification of chromatography data
analytical-chemistry chromatography-analysis hplc
Last synced: 22 Aug 2026
https://github.com/CHOP-CGTInformatics/REDCapTidieR
Makes it easy to read REDCap Projects into R
r redcap redcap-api tidy-data
Last synced: 22 Aug 2026
https://github.com/kinisi-dev/kinisi
A Python package for estimating diffusion properties from molecular dynamics simulations.
diffusion molecular-dynamics python
Last synced: 22 Aug 2026
https://github.com/FrederikLizakJohansen/DebyeCalculator
A vectorised implementation of the Debye Scattering Equation on CPU and GPU
Last synced: 22 Aug 2026
https://github.com/fieldtrip/fieldtrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
analysis beamformer bids brain connectivity dipole donders ecog eeg fieldtrip ieeg matlab meg neuroimaging neuroscience seeg statistics time-frequency
Last synced: 22 Aug 2026
https://github.com/JGCRI/helios
Heating and Cooling Degree processing for GCAM from various sources such as WRF and CMIP
Last synced: 22 Aug 2026
https://github.com/Pecnut/stokesian-dynamics
Implementation of Stokesian Dynamics in Python
Last synced: 22 Aug 2026
https://github.com/chenyangkang/stemflow
A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)
adaptive-spatio-temporal-exploratory-model animal animal-movement big-data biodiversity biogeography bird-migration bird-survey ebird ecology ecology-modelling geospatial machine-learning movement movement-ecology ornithology spatio-temporal-analysis spatiotemporal spatiotemporal-dynamics species-distribution-modeling
Last synced: 22 Aug 2026
https://github.com/R-Computing-Lab/BGmisc/
Functions for extended pedigree analysis
behavior-genetics cran package r r-package
Last synced: 22 Aug 2026
https://github.com/dynamicslab/pykoopman
A package for computing data-driven approximations to the Koopman operator.
Last synced: 22 Aug 2026
https://github.com/DeepRank/deeprank2
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
convolutional-neural-networks deep-learning graph-neural-networks protein-protein-interfaces pytorch single-residue-variants structural-biology
Last synced: 22 Aug 2026
https://github.com/beardymcjohnface/Koverage
Quickly get coverage statistics given reads and an assembly
Last synced: 22 Aug 2026
https://github.com/JaGeo/LobsterPy
Package to perform automatic bonding analysis with the program Lobster in the field of computational materials science and quantum chemistry
chemical-bonding computational-chemistry computational-materials-science materials-informatics plotting python
Last synced: 22 Aug 2026
https://github.com/cbyrohl/scida
scida is an out-of-the-box analysis tool for large scientific datasets. It primarily supports the astrophysics community, focusing on cosmological and galaxy formation simulations using particles or unstructured meshes, as well as large observational datasets. This tool uses dask, allowing analysis to scale.
Last synced: 22 Aug 2026
https://github.com/dirmeier/surjectors
Surjection layers for density estimation with normalizing flows
bijections density-estimation normalizing-flows python surjections
Last synced: 22 Aug 2026
https://github.com/lrnv/Copulas.jl
A fully `Distributions.jl`-compliant copula package
copula julia
Last synced: 22 Aug 2026
https://github.com/acerbilab/pybads
PyBADS: Bayesian Adaptive Direct Search optimization algorithm for model fitting in Python
bayesian-optimization log-likelihood noiseless-functions noisy-functions optimization-algorithms python
Last synced: 22 Aug 2026
https://github.com/nansencenter/DAPPER
Data Assimilation with Python: a Package for Experimental Research
bayesian-filter bayesian-methods chaos data-assimilation enkf kalman kalman-filtering particle-filter state-estimation
Last synced: 22 Aug 2026
https://github.com/tum-pbs/PhiML
Intuitive scientific computing with dimension types for Jax, PyTorch, TensorFlow & NumPy
Last synced: 22 Aug 2026
https://github.com/mindearth/mobilkit
A Python Toolkit for Urban Resilience and Disaster Risk Management Analytics using High Frequency Human Mobility Data
Last synced: 22 Aug 2026
https://github.com/Oden-EAG/hp3d
MPI/OpenMP hp-adaptive 3D finite element software
computational-science fem finite-elements high-order hp-adaptivity hpc multiphysics scientific-computing
Last synced: 22 Aug 2026
https://github.com/worlddynamics/WorldDynamics.jl
An open-source framework written in Julia for global integrated assessment models.
hacktoberfest integrated-assessment-model julia sciml simulation world3
Last synced: 22 Aug 2026
https://github.com/spinjet/pdopt-code
Public Release Version of PDOPT
design-space-exploration multi-disciplinary optimization set-based-design
Last synced: 22 Aug 2026
https://gitlab.com/materials-modeling/calorine
[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)
atomic scale simulation condensed matter physics force constants gpumd hiphive machine learning potentials molecular dynamics neural network potentials phonons physics python thermal conductivity thermal transport
Last synced: 22 Aug 2026
https://github.com/pyro-kinetics/pyrokinetics
Python library to run and analyse gyrokinetics simulations
Last synced: 22 Aug 2026
https://github.com/AlexanderJuestel/pyheatdemand
Processing Tool for Heat Demand Data
geospatial-data geospatial-data-analysis heatmaps spatial-data spatial-data-analysis
Last synced: 22 Aug 2026
https://github.com/vergauwenthomas/MetObs_toolkit
A toolkit for using non-traditional meteorological observations
climate meteorology python toolkit
Last synced: 22 Aug 2026
https://github.com/benlansdell/ethome
Tools for machine learning of animal behavior
boris deeplabcut dlc ndx-pose neurodata-without-borders pose-tracking supervised-learning
Last synced: 22 Aug 2026
https://github.com/thieu1995/permetrics
Artificial intelligence (AI, ML, DL) performance metrics implemented in Python
classification classification-report clustering-evaluation coefficient-of-determination deviation-of-runoff-volume evaluation-metrics kling-gupta-efficiency mae nash-sutcliffe-efficiency performance-metrics regression regression-methods relative-error rmse symmetric-mean-absolute-percentage willmott-index
Last synced: 22 Aug 2026
https://github.com/markur4/plotastic
Streamlining statistical analysis by using plotting keywords in Python.
anova data-analysis data-science data-visualization hypothesis-testing matplotlib omnibus pairwise-testing pingouin plotting python seaborn statistical-tests statistics ttest user-friendly
Last synced: 22 Aug 2026
https://github.com/konfound-project/konfound
R package for carrying out sensitivity analysis
Last synced: 22 Aug 2026
https://github.com/devnums/pyheartlib
A Python package for processing electrocardiogram signals ❤️
ecg electrocardiogram machine-learning
Last synced: 22 Aug 2026
https://github.com/pnnl/HyperNetX
Python package for hypergraph analysis and visualization.
hypergraph hypergraphs knowledge-graph property-hypergraphs python s-linegraph simplicial-complexes simplicial-homology
Last synced: 22 Aug 2026
https://github.com/moritzobenauer/ProjectRaccoon
Automated construction of atomistic and coarse-grained models in the PDB format for polymer peptide conjugates.
cheminformatics molecular-dynamics-simulation molecular-modeling pdb-files
Last synced: 22 Aug 2026
https://github.com/FAU-LAP/NOMAD-CAMELS
We are developing a configurable measurement software (CAMELS), targeted towards the requirements of experimental solid-state physics. Here many experiments utilize a multitude of measurement devices used in dynamically changing setups.
Last synced: 22 Aug 2026
https://github.com/chadagreene/Tide-Model-Driver
Tide Model Driver for MATLAB, version 3.0
Last synced: 22 Aug 2026
https://github.com/pylops/pyproximal/
PyProximal – Proximal Operators and Algorithms in Python
inverse-problems linear-algebra proximal-algorithms python
Last synced: 22 Aug 2026
https://github.com/FabianPlum/OmniTrax
Deep learning-driven multi animal tracking and pose estimation add-on for Blender
blender deeplabcut deeplearning object-detection tracking yolo
Last synced: 22 Aug 2026
https://github.com/seamplex/feenox/
Cloud-first free no-fee no-X uniX-like finite-element(ish) computational engineering tool
finite-elements hpc numerical-methods ode-solver pde-solver
Last synced: 22 Aug 2026
https://github.com/MedMaxLab/selfEEG
selfEEG: a Python library for Self-Supervised Learning on Electroencephalography (EEG) data
deep-learning eeg self-supervised-learning
Last synced: 22 Aug 2026
https://github.com/JuliaAI/Imbalance.jl
A Julia toolbox with resampling methods to correct for class imbalance.
class-imbalance classification machine-learning
Last synced: 22 Aug 2026
https://github.com/uw-comphys/shapelets
shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy.
Last synced: 22 Aug 2026
https://github.com/ahudde/greeks
Sensitivities of Prices of Financial Options and Implied Volatilites
asian-option greeks implied-volatility option r-package
Last synced: 22 Aug 2026
https://github.com/UTEL-UIUC/gtfs_segments
GTFS Segments: A fast and efficient library to generate bus stop spacings
bus distribution gtfs-feed python stop transit transit-data
Last synced: 22 Aug 2026
https://github.com/frank1010111/pywaterflood
Capacitance resistance models for waterflood connectivity
petroleum-engineering python reservoir rust
Last synced: 22 Aug 2026
https://github.com/suneeshjacob/ACRoD
Automatic Computation for Robot Design
Last synced: 22 Aug 2026
https://github.com/Open-Minds-Lab/MRdataset
MRdataset : unified interface to various neuroimaging dataset formats
mri neuroimaging neuroscience niqc quality-control
Last synced: 22 Aug 2026
https://github.com/firedrakeproject/checkpoint_schedules
Schedules for incremental checkpointing of adjoint simulations.
Last synced: 22 Aug 2026
https://github.com/kdm9/Acanthophis
A comprehensive, opinionated plant metagenomics and variant calling pipeline in Snakemake
Last synced: 22 Aug 2026
https://github.com/ropensci/quadkeyr
An R package designed to create raster images from QuadKey-identified data (Microsoft Bing Maps Tile System), aiming to simplify the analysis of Facebook mobility data.
geospatial quadkey raster rstats tilemap
Last synced: 22 Aug 2026
https://github.com/KingsburyLab/pyEQL
A Python library for solution chemistry
Last synced: 22 Aug 2026
https://github.com/HofstadterTools/HofstadterTools
A Python package for analyzing the Hofstadter model.
band-theory condensed-matter-physics electromagnetism fractals mathematical-physics quantum-hall-effect quantum-physics theoretical-physics topological-materials topological-order
Last synced: 22 Aug 2026
https://github.com/AndresRTejedor/Mold
Lammps package including square-like well potential to implement Mold integration and Lattice mold techniques
Last synced: 22 Aug 2026
https://github.com/Pometry/Raphtory
Scalable graph analytics database powered by a multithreaded, vectorized temporal engine, written in Rust
analytics database embedded-database graph graph-database olap python rust temporal time-series
Last synced: 22 Aug 2026
https://github.com/shaelebrown/TDApplied
An R package for statistics and machine learning with persistence diagrams
Last synced: 22 Aug 2026
https://github.com/Yu-Group/simChef
An R package to facilitate PCS simulation studies.
Last synced: 22 Aug 2026
https://github.com/hendr1km/dropout
tools for dropout analysis when working with survey data
Last synced: 22 Aug 2026
https://github.com/nla-group/fABBA
A Python library for the fast symbolic approximation of time series
dimensionality-reduction machine-learning symbolic-aggregate-approximation symbolic-representation time-series time-series-analysis time-series-classification time-series-clustering time-series-forecasting
Last synced: 22 Aug 2026
https://github.com/TRACER-LULab/Hyperelastics.jl
Hyperelastic Material modelling with support for Automatic Differentiation
finite-element-methods hyperelasticity material-model
Last synced: 22 Aug 2026
https://github.com/oleksulkowski/Syn-CpG-Spacer
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
dinucleotide-frequencies genetics genome-browser molecular-biology virology
Last synced: 22 Aug 2026
https://github.com/MREYE-LUMC/ZOSPy
Wrapper around the Zemax OpticStudio API. Provides a more pythonic and intuitive way to interact with the ZOS-API through python using a .NET connection.
optics optics-simulation opticstudio python zemax zos-api
Last synced: 22 Aug 2026
