deeprank2

convolutional-neural-networks deep-learning graph-neural-networks protein-protein-interfaces pytorch single-residue-variants structural-biology

Score: 12.986188493834389

Last synced: about 22 hours ago
JSON representation

Repository metadata:

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Host: GitHub
URL: https://github.com/DeepRank/deeprank2
Owner: DeepRank
License: apache-2.0
Created: 2022-01-21T13:12:57.000Z (over 4 years ago)
Default Branch: main
Last Pushed: 2026-03-12T10:12:12.000Z (3 months ago)
Last Synced: 2026-06-10T16:05:20.537Z (11 days ago)
Topics: convolutional-neural-networks, deep-learning, graph-neural-networks, protein-protein-interfaces, pytorch, single-residue-variants, structural-biology
Language: Python
Homepage: https://deeprank2.readthedocs.io/en/latest/?badge=latest
Size: 107 MB
Stars: 59
Watchers: 8
Forks: 14
Open Issues: 32
Metadata Files:
- Readme: README.dev.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
- Zenodo: .zenodo.json

Owner metadata:

Name: DeepRank
Login: DeepRank
Email:
Kind: organization
Description:
Website:
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/31408512?v=4
Repositories: 19
Last Synced at: 2024-05-06T00:03:19.394Z
Profile URL: https://github.com/DeepRank

GitHub Events

Total

Create event: 2
Fork event: 4
Issue comment event: 7
Issues event: 5
Pull request event: 2
Pull request review event: 1
Watch event: 15
Total: 36

Last Year

Create event: 1
Fork event: 2
Issue comment event: 1
Issues event: 4
Watch event: 2
Total: 10

Committers metadata

Last synced: 3 days ago

Total Commits: 3,021
Total Committers: 35
Avg Commits per committer: 86.314
Development Distribution Score (DDS): 0.662

Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0

Name	Email	Commits
gcroci2	c**a@g**m	1020
DaniBodor	d**r@e**l	850
manonreau	m**u@g**m	285
Coos Baakman	c**n@r**l	256
Nicolas Renaud	n**d@g**m	169
Joyce	j**6@g**m	93
cbaakman	c**n@u**l	52
Sven van der Burg	s**g@e**l	44
Chia Yu Lin	c**n@i**l	30
Giulia Crocioni	c**n@i**l	30
Chia Yu Lin	c**n@i**l	22
Giulia Crocioni	c**n@i**l	21
Daniel Rademaker	4****r	18
Manon F. Réau	m**u@i**x	15
Chia Yu Lin	c**n@s**l	13
Dani Bodor	d**r@e**l	13
Giulia Crocioni	c**n@i**l	12
Chia Yu Lin	c**n@i**l	12
Giulia Crocioni	c**n@i**l	11
Manon Réau	m**u@u**l	10
rgayatri	r****i	10
Giulia Crocioni	c**n@i**l	8
Manon F. Réau	m**u@i**x	4
Giulia Crocioni	c**n@i**l	4
Farzaneh Parizi	5****i	4
Coos Baakman	c**n@r**l	3
Jennifer Wei	9****i	2
Alexandre Bonvin	a**n@g**m	2
Coos	c**n@g**m	2
root	r**t@D**n	1
and 5 more...

Issue and Pull Request metadata

Last synced: 3 months ago

Total issues: 138
Total pull requests: 148
Average time to close issues: 8 months
Average time to close pull requests: 8 days
Total issue authors: 20
Total pull request authors: 9
Average comments per issue: 2.0
Average comments per pull request: 1.28
Merged pull request: 112
Bot issues: 0
Bot pull requests: 3

Past year issues: 2
Past year pull requests: 3
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 2
Past year average comments per issue: 2.5
Past year average comments per pull request: 0.33
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/DeepRank/deeprank2

Top Issue Authors

gcroci2 (67)
DaniBodor (43)
rubenalv (3)
Tizzzzy (3)
DTRademaker (3)
Lsz-20 (2)
DanLep97 (2)
lloydtripp (2)
Norgent (2)
aminzia (1)
abhishektiwari (1)
cbaakman (1)
svenvanderburg (1)
DarioMarzella (1)
darnells (1)

Top Pull Request Authors

gcroci2 (92)
DaniBodor (45)
cbaakman (2)
DarioMarzella (2)
dependabot[bot] (2)
FriederikeBiermann (2)
DanLep97 (1)
jnwei (1)
renovate[bot] (1)

Top Issue Labels

stale (47)
nice to have (23)
bug (17)
feature (13)
docs (13)
priority (13)
CI (11)
needs info (9)
Query (8)
testing (7)
blocking (7)
tools (6)
good first issue (6)
Trainer (6)
JOSS (3)
SS (3)
covariates (3)
Dataset (3)
duplicate (2)
MolStruct (2)
utils (2)
class diagram (2)
blocked (2)
disc (2)
tutorials (1)
neuralnets (1)
framework paper (1)

Top Pull Request Labels

stale (11)
SS (5)
JOSS (3)
dependencies (2)
docs (1)
blocking (1)
Query (1)
bug (1)
class diagram (1)

Package metadata

Total packages: 1
Total downloads:
- pypi: 136 last-month
Total dependent packages: 0
Total dependent repositories: 0
Total versions: 10
Total maintainers: 1

pypi.org: deeprank2

DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants.

Homepage:
Documentation: https://deeprank2.readthedocs.io/en/latest/?badge=latest
Licenses: Apache-2.0 license
Latest release: 3.1.0 (published almost 2 years ago)
Last Synced: 2026-06-18T20:01:33.090Z (3 days ago)
Versions: 10
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 136 Last month
Rankings:
- Dependent packages count: 7.366%
- Average: 38.093%
- Dependent repos count: 68.819%
Maintainers (1)
- gcroci2

Dependencies

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Dockerfile docker

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env/environment.yml pypi

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torch_cluster ==1.6.3
torch_scatter ==2.1.2
torch_sparse ==0.6.18
torch_spline_conv ==1.2.2

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