https://github.com/coleygroup/pyscreener
pythonic interface to virtual screening software
computational-biology distributed-computing molecular-docking ray virtual-screening
Last synced: 22 Aug 2026
https://github.com/TriPed-Robot/trip_kinematics
Python package for inverse kinematic calculations of hybrid serial parallel robots
closed-chain hybrid-chain inverse-kinematics kinematic-modeling kinematics manipulator parallel-robot python robotics serial-robotics trajectory-planning
Last synced: 22 Aug 2026
https://github.com/aliaksei135/seedpod_ground_risk/
Ground Risk model for UAS flight path analysis and risk-aware path finding
drone drones ground-risks population-model risk-analysis risk-modelling uas uav unmanned-aerial-system
Last synced: 22 Aug 2026
https://github.com/csdms/babelizer/
Transform BMI-wrapped models into Python packages
bmi c csdms cxx fortran hacktoberfest pymt python
Last synced: 22 Aug 2026
https://code.usgs.gov/umesc/quant-ecology/fishstan/
Version 2+ of the fishStan package.
Last synced: 22 Aug 2026
https://github.com/finagle29/DBSP_DRP/
Fully-automated data reduction pipeline for DBSP built with PypeIt
Last synced: 22 Aug 2026
https://github.com/FSEC-Photovoltaics/pvrpm-lcoe
PV Simulation using SAM and Python
Last synced: 22 Aug 2026
https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI
Automated air liquid interface cell culture analysis using deep optical flow.
bioinformatics biology deep-learning image-analysis optical-flow python pytorch
Last synced: 22 Aug 2026
https://github.com/chchch/sanskrit-alignment/
Sequence alignment and textual reconstruction for Sanskrit texts
haskell javascript philology phylogeny sequence-alignment
Last synced: 22 Aug 2026
https://github.com/arcaldwell49/SimplyAgree
A simple R package for calculating absolute agreement and estimating required sample sizes for studies of absolute agreement
Last synced: 22 Aug 2026
https://github.com/florisvb/PyNumDiff
Methods for numerical differentiation of noisy data in python
Last synced: 22 Aug 2026
https://github.com/octopus-sensing/octopus-sensing
eeg experience-scenarios gsr ppg questionnaire shimmer
Last synced: 22 Aug 2026
https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator
Program for generating load curves for residential consumers. Agentbased and extremly detailed.
Last synced: 22 Aug 2026
https://github.com/ggciag/mandyoc
MANDYOC is a finite element code written on top of the PETSc library to simulate thermo-chemical convection of the Earth's mantle
Last synced: 22 Aug 2026
https://github.com/ColemanRHarris/mxnorm
R package to normalize multiplexed imaging data.
cran package r
Last synced: 22 Aug 2026
https://github.com/glasgowcompbio/vimms/
A programmable and modular LC/MS simulator in Python
dda fragmentation metabolomics python simulation
Last synced: 22 Aug 2026
https://github.com/PaulSt/NGSTrefftz
Add-On to NGSolve for Trefftz methods
finite-element-method numerical-methods open-source trefftz-methods
Last synced: 22 Aug 2026
https://github.com/BjoernBiltzinger/pyspi
Pure python tools for interfacing with INTEGRAL SPI data. It also provides a 3ML plugin for performing full forward folding spectral analysis of GRBs. The documentation with a few examples is available at https://pyspi.readthedocs.io/.
3ml python spi-data
Last synced: 22 Aug 2026
https://github.com/SandoghdarLab/PiSCAT
PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.
data-analysis microscopy-images nano-particles python
Last synced: 22 Aug 2026
https://github.com/BackmanLab/PWSpy
A Python library dedicated to the analysis of Partial Wave Microscopy (PWS) data.
Last synced: 22 Aug 2026
https://github.com/fredstro/hilbertmodgroup
Implementation of Hilbert modular groups using SageMath
Last synced: 22 Aug 2026
https://github.com/phenology/cgc
A clustering tool for geospatial applications
Last synced: 22 Aug 2026
https://github.com/gesistsa/sweater
👚 Speedy Word Embedding Association Test & Extras using R
bias-detection r textanalysis wordembedding
Last synced: 22 Aug 2026
https://github.com/ECP-copa/Cabana
Performance-portable library for particle-based simulations
co-design exascale exascale-computing high-performance-computing hpc kokkos particles
Last synced: 22 Aug 2026
https://github.com/mishioo/tesliper
Theoretical Spectroscopist's Little Helper
batch-processing chemical-computing chemistry gaussian optical-spectroscopy python spectral-simulations spectroscopy workflow-automation
Last synced: 22 Aug 2026
https://github.com/SWIFTSIM/emulator
The SWIFT simulation cosmological emulator (swift-emulator)
machine-learning
Last synced: 22 Aug 2026
https://github.com/simoninireland/epyc
Python computational experiment management
Last synced: 22 Aug 2026
https://github.com/jeremiecoullon/SGMCMCJax
Lightweight library of stochastic gradient MCMC algorithms written in JAX.
bayesian-inference jax sampling-methods
Last synced: 22 Aug 2026
https://github.com/pyamg/pyamg/
Algebraic Multigrid Solvers in Python
amg conda krylov multigrid pyamg python solver sparse-matrix
Last synced: 22 Aug 2026
https://github.com/pygsflow/pygsflow
Python package to Create, Read, Write, Edit, and Visualize GSFLOW models
groundwater groundwater-modelling gsflow integrated-modelling modflow prms pygsflow python surface-water usgs
Last synced: 22 Aug 2026
https://github.com/SINTEF/AutoActive-ActivityPresenter
Tool for human activity data import, synchronization, visualization and data analysis facilitation
Last synced: 22 Aug 2026
https://gitlab.com/culturalcartography/text2map
R Tools for Text Matrices
R computational-social-science text analysis
Last synced: 22 Aug 2026
https://github.com/lexedata/lexedata
Lexical Data Editing tools
cldf cognates2nexus comparative-linguistics dataset-interface lexicon phylogenetics wordlist
Last synced: 22 Aug 2026
https://github.com/weecology/portalcasting
Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics
ecology forecasting portal r r-package r-stats reproducible-research shiny workflow
Last synced: 22 Aug 2026
https://github.com/dgbowl/yadg
yadg: yet another datagram
batteries catalysis chromatography data-science electrochemistry parser
Last synced: 22 Aug 2026
https://github.com/RWTH-EBC/AixCaliBuHA
Wield this tool to be King Arthur of your models.
maintained tool
Last synced: 22 Aug 2026
https://github.com/elizabethnewman/hessQuik
Computing gradients and Hessians of feed-forward networks with GPU acceleration
derivatives gpu-acceleration neural-network
Last synced: 22 Aug 2026
https://github.com/althonos/pyrodigal/
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd
Last synced: 22 Aug 2026
https://github.com/Heldenkombinat/Logodetect
Find logos in images and videos in just one-shot. Never be embarrassed again to say that you have a small data situation!
image-processing logo-detection object-detection one-shot-learning small-dataset video-processing
Last synced: 22 Aug 2026
https://github.com/tumcms/Open-Infra-Platform
This is the official repository of the open-source Open Infra Platform software (as of April 2020).
boost building-information-modelling ifc infrastructure okstra point-cloud
Last synced: 22 Aug 2026
https://github.com/bauer-alex/APCtools
Descriptive and model-based tools for Age-Period-Cohort analyses
Last synced: 22 Aug 2026
https://github.com/lilyminium/psiresp
RESP with inter- and intra-molecular constraints in Psi4.
atomic-charges molecular-dynamics psi4 python
Last synced: 22 Aug 2026
https://github.com/cgre-aachen/gemgis
Spatial data processing for geomodeling
geographic geographic-data geomodeling geospatial jupyter jupyter-notebook modeling notebooks processing python raster-data spatial-data vector-data visualization
Last synced: 22 Aug 2026
https://github.com/AP6YC/AdaptiveResonance.jl
A Julia package for Adaptive Resonance Theory (ART) algorithms.
julia machine-learning
Last synced: 22 Aug 2026
https://github.com/project-gemmi/gemmi/
macromolecular crystallography library and utilities
ccp4 cif crystallography mmcif molecular-structures mtz pdb-files protein-structure structural-biology
Last synced: 22 Aug 2026
https://github.com/JuliaOcean/PlanktonIndividuals.jl
This package simulates the behaviors of an ensemble of phytoplankton individuals.
Last synced: 22 Aug 2026
https://github.com/infer-actively/pymdp
A Python implementation of active inference for Markov Decision Processes
Last synced: 22 Aug 2026
https://github.com/R-Vessel-X/SlicerRVXLiverSegmentation
3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X
3d-slicer-extension
Last synced: 22 Aug 2026
https://github.com/uw-comphys/opencmp
OpenCMP is a computational multiphysics software package based on the finite element method. It is primarily intended for physicochemical processes involving significant convective flow.
computational-fluid-dynamics finite-element-methods modeling simulation
Last synced: 22 Aug 2026
https://github.com/ropensci/unifir
A unifying interface for calling Unity from R
cran cran-r r rstats unifir unity unity3d visualization
Last synced: 22 Aug 2026
https://github.com/alstat/ALUES
Agricultural Land Use Evaluation System
agricultural-modelling agriculture r r-package
Last synced: 22 Aug 2026
https://github.com/OttoStruve/muler
A Python package for working with pipeline-produced spectra from IGRINS, HPF, and Keck NIRSPEC
astronomical-algorithms astronomy data-analysis data-science echelle exoplanets infrared python spectroscopy stars stellar-atmospheres
Last synced: 22 Aug 2026
https://github.com/cartemic/pypbomb/
A small package to assist with detonation tube design
detonation
Last synced: 22 Aug 2026
https://framagit.org/GustaveCoste/off-product-environmental-impact/
Environmental impact estimation of Open Food Facts products
Last synced: 22 Aug 2026
https://github.com/FEniCS/basix
FEniCSx finite element basis evaluation library
basis-functions fenicsx finite-elements high-order
Last synced: 22 Aug 2026
https://github.com/byuflowlab/GXBeam.jl
Pure Julia Implementation of Geometrically Exact Beam Theory
beam-elements finite-element-analysis gebt julia nonlinear
Last synced: 22 Aug 2026
https://github.com/mattpitkin/lintegrate
A numerical integration routine that works for the natural logarithm of functions
gsl gsl-functions integral python wrapper
Last synced: 22 Aug 2026
https://github.com/lucass-carneiro/QuasinormalModes.jl/
A Julia package for computing discrete eigenvalues of second order ODEs
black-holes differential-equations discrete-eigenvalues julia quasinormal-modes
Last synced: 22 Aug 2026
https://github.com/baxmittens/VTUFileHandler.jl
A VTU library in the Julia language that implements an algebra for basic mathematical operations on VTU data.
Last synced: 22 Aug 2026
https://github.com/mad-lab-fau/imucal
A Python library to calibrate 6 DOF IMUs
Last synced: 22 Aug 2026
https://github.com/warrickball/tomso
TOMSO (Tools for Models of Stars and their Oscillations) is a set of Python modules for loading and saving input and output files for and from stellar evolution and oscillation codes.
Last synced: 22 Aug 2026
https://github.com/NKI-AI/direct
Deep learning framework for MRI reconstruction
deep-learning fastmri-challenge inverse-problems medical-imaging mri-reconstruction pytorch
Last synced: 22 Aug 2026
https://github.com/VeinsOfTheEarth/rabpro
Delineating watershed basins and computing attribute statistics using Google Earth Engine
manuscript python
Last synced: 22 Aug 2026
https://github.com/ScialdoneLab/MitoHEAR
MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets.
bioinformatics-analysis heteroplasmy open-source rstats-package
Last synced: 22 Aug 2026
https://github.com/dfki-ric-underactuated-lab/torque_limited_simple_pendulum
Torque Limited Simple Pendulum Underactuated System
Last synced: 22 Aug 2026
https://github.com/maxibor/sam2lca
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
Last synced: 22 Aug 2026
https://github.com/chrisaberson/BetterReg
Better statistics for regression (OLS and logistic)
Last synced: 22 Aug 2026
https://github.com/szwiep/py_SBeLT
A Markov-type numerical model of sediment particle transport in rivers
Last synced: 22 Aug 2026
https://github.com/gridap/GridapDistributed.jl/
Parallel distributed-memory version of Gridap
distributed finite-elements mpi parallel parallel-computing partial-differential-equations
Last synced: 22 Aug 2026
https://github.com/mmollina/viewpoly
R package to visualize genetic maps and QTL analysis.
Last synced: 22 Aug 2026
https://github.com/pysal/spopt
Spatial Optimization
facility-location location-allocation location-modeling python regionalization resource-planning routing spatial-analysis spatial-optimization transportation
Last synced: 22 Aug 2026
https://github.com/mbarzegary/BioDeg-UI/
A finite element software for the simulation of the corrosion and biodegradation process in metallic biomaterials
Last synced: 22 Aug 2026
https://github.com/pnnl/interflow
A Python package for organizing and calculating cross-sectoral interdependency flow values
Last synced: 22 Aug 2026
https://github.com/openpharma/rbmi
Reference based multiple imputation R package
Last synced: 22 Aug 2026
https://github.com/C0PEP0D/otto
A Python package to simulate, solve and visualize the source-tracking POMDP
olfactory-search pomdp reinforcement-learning source-tracking
Last synced: 22 Aug 2026
https://github.com/engyasin/Offline_MOT
Multiple traffic entities detection and tracking from bird-view drone stationary videos https://engyasin.github.io/Offline_MOT/
drone multiple-object-tracking object-detection python
Last synced: 22 Aug 2026
https://gitlab.com/moerman1/fhi-cc4s
This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations ([FHI-aims](https://fhi-aims.org/)) and the Coupled Cluster for Solids ([CC4S](https://manuals.cc4s.org/user-manual/index.html)) code developed by Felix Hummel and Andreas Grüneis at the TU Wien. The CC-aims interface is documented [here](https://moerman1.gitlab.io/fhi-cc4s/).
Last synced: 22 Aug 2026
https://github.com/simplefoc/Arduino-FOC/
Arduino FOC for BLDC and Stepper motors - Arduino Based Field Oriented Control Algorithm Library
arduino arduino-foc arduino-library arduino-simplefoc bldc-motor bldc-motor-controller bldc-motors encoder foc foc-algorithm low-cost motor stepper-library stepper-motor stepper-motor-control vector-control
Last synced: 22 Aug 2026
https://github.com/icb-dcm/pyabc
distributed, likelihood-free inference
abc approximate-bayesian-inference likelihood-free-inference parameter-inference
Last synced: 22 Aug 2026
https://github.com/vipinagrawal25/MeMC
The software mainly has three sections:
Last synced: 22 Aug 2026
https://gitlab.com/thartwig/asloth
Semi-analytical model A-SLOTH (Ancient Stars and Local Observables by Tracing Halos)
Last synced: 22 Aug 2026
https://github.com/samuelburbulla/dune-mmesh/
The Dune Grid Module for Moving Interfaces
dune fem grid
Last synced: 22 Aug 2026
https://github.com/connectomicslab/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
bids bids-apps bidsapp brain chuv connectome dmri docker eeg fmri parcellation pipelines python singularity
Last synced: 22 Aug 2026
https://github.com/ropensci/tidyqpcr
quantitative PCR analysis in the tidyverse
miqe qpcr qpcr-analysis r r-package rstats tidyverse
Last synced: 22 Aug 2026
https://github.com/alesantuz/musclesyneRgies
R package to extract muscle synergies from electromyogram
emg muscle-synergies nmf physiol r rstudio
Last synced: 22 Aug 2026
https://github.com/Muhao-Chen/Tensegrity_Finite_Element_Method_TsgFEM
Tensegrity_Finite_Element_Method(TsgFEM)
Last synced: 22 Aug 2026
https://github.com/tiagoseq/NeuralFieldEq.jl
NeuralFieldEq.jl: An efficient solver to compute Neural Field Equations in several scenarios
differential-equations fast-fourier-transform integral-equations julia numerical-analysis numerical-methods
Last synced: 22 Aug 2026
https://gitlab.com/dmt-development/dmt-core
Device modeling toolkit core package
Electrical Engineering python python3
Last synced: 22 Aug 2026
