JOSS: https://github.com/connectomicslab/connectomemapper3
bids bids-apps bidsapp brain chuv connectome dmri docker eeg fmri parcellation pipelines python singularity
Score: 13.448291649864125
Last synced: about 14 hours ago
JSON representation
Repository metadata:
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
- Host: GitHub
- URL: https://github.com/connectomicslab/connectomemapper3
- Owner: connectomicslab
- License: other
- Created: 2019-04-24T06:27:45.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2025-05-06T11:13:03.000Z (about 1 year ago)
- Last Synced: 2026-01-06T13:57:41.373Z (6 months ago)
- Topics: bids, bids-apps, bidsapp, brain, chuv, connectome, dmri, docker, eeg, fmri, parcellation, pipelines, python, singularity
- Language: HTML
- Homepage: https://connectome-mapper-3.readthedocs.io
- Size: 354 MB
- Stars: 80
- Watchers: 2
- Forks: 31
- Open Issues: 21
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGES
- Contributing: docs/contributing.rst
- License: LICENSE
- Citation: CITATION.cff
- Support: docs/support.rst
- Zenodo: .zenodo.json
Owner metadata:
- Name: Connectomics Lab
- Login: connectomicslab
- Email:
- Kind: organization
- Description:
- Website: http://wp.unil.ch/connectomics
- Location: Radiology Research Center - Lausanne University Hospital
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/49934994?v=4
- Repositories: 4
- Last Synced at: 2023-03-05T13:24:58.845Z
- Profile URL: https://github.com/connectomicslab
GitHub Events
Total
- Create event: 2
- Delete event: 1
- Fork event: 1
- Issue comment event: 3
- Issues event: 5
- Push event: 2
- Watch event: 3
- Total: 17
Last Year
- Create event: 2
- Delete event: 1
- Fork event: 1
- Issue comment event: 2
- Issues event: 3
- Push event: 2
- Watch event: 3
- Total: 14
Committers metadata
Last synced: 8 months ago
Total Commits: 3,464
Total Committers: 18
Avg Commits per committer: 192.444
Development Distribution Score (DDS): 0.155
Commits in past year: 2
Committers in past year: 1
Avg Commits per committer in past year: 2.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Sebastien Tourbier | s****1@g****m | 2927 |
| Emeline Mullier | 4****r | 181 |
| Adrien Birbaumer | a****r@g****m | 62 |
| Joan Rue | j****q@g****m | 51 |
| katharina | k****b@g****m | 51 |
| davidrs06 | c****t@L****) | 38 |
| davidrs06 | d****o@e****h | 36 |
| Adrien Birbaumer | a****r@g****m | 33 |
| allcontributors[bot] | 4****] | 24 |
| Øystein Sørensen | o****n@h****m | 16 |
| Mikkel Schöttner | m****r@y****e | 15 |
| Anil Tuncel | a****l@e****h | 15 |
| Alessandra Griffa | a****a@e****h | 7 |
| inkuba | j****j@y****m | 2 |
| jwirsich | j****h@u****h | 2 |
| Katharina Glomb | k****b@u****u | 2 |
| Maxim Bulatov | d****t@g****m | 1 |
| Stephan Heunis | s****s@f****e | 1 |
Issue and Pull Request metadata
Last synced: 10 months ago
Total issues: 55
Total pull requests: 64
Average time to close issues: 3 months
Average time to close pull requests: 21 days
Total issue authors: 19
Total pull request authors: 9
Average comments per issue: 1.58
Average comments per pull request: 0.89
Merged pull request: 51
Bot issues: 0
Bot pull requests: 1
Past year issues: 3
Past year pull requests: 4
Past year average time to close issues: 1 day
Past year average time to close pull requests: 8 days
Past year issue authors: 3
Past year pull request authors: 2
Past year average comments per issue: 0.67
Past year average comments per pull request: 0.5
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 1
Top Issue Authors
- sebastientourbier (15)
- jsheunis (12)
- milad7093 (6)
- MeropGont (3)
- mschoettner (3)
- KyleeCJ (2)
- jwirsich (1)
- osorensen (1)
- IsottaR (1)
- hugofluhr (1)
- ldweinstock (1)
- zyy1219888 (1)
- ulgenklc (1)
- smeisler (1)
- iPsych (1)
Top Pull Request Authors
- sebastientourbier (42)
- emullier (20)
- osorensen (4)
- joanrue (2)
- dependabot[bot] (2)
- stefanches7 (1)
- eltociear (1)
- mschoettner (1)
- jsheunis (1)
Top Issue Labels
- bug (17)
- enhancement (5)
- high-priority (4)
- Brainhack21! (4)
- documentation (3)
- mid-effort (3)
- big-effort (3)
- little-effort (3)
- high-impact (3)
- refactoring (2)
- Brainhack22! (1)
- maintenance (1)
- medium-priority (1)
- BrainHack! (1)
- infra (1)
- help wanted (1)
Top Pull Request Labels
- enhancement (7)
- release (5)
- documentation (4)
- big-effort (4)
- maintenance (3)
- bug-fix (3)
- bug (3)
- little-effort (2)
- mid-effort (2)
- refactoring (2)
- high-impact (2)
- Brainhack21! (2)
- dependencies (2)
- infra (1)
- good first issue (1)
- paper (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 379 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 6
- Total maintainers: 1
pypi.org: connectomemapper
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping
- Homepage: https://github.com/connectomicslab/connectomemapper3
- Documentation: https://connectomemapper.readthedocs.io/
- Licenses: BSD-3-Clause
- Latest release: 3.2.0 (published about 2 years ago)
- Last Synced: 2025-11-02T06:03:27.357Z (8 months ago)
- Versions: 6
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 379 Last month
-
Rankings:
- Forks count: 7.39%
- Stargazers count: 8.817%
- Dependent packages count: 10.112%
- Average: 15.491%
- Dependent repos count: 21.571%
- Downloads: 29.566%
- Maintainers (1)
Dependencies
- actions/checkout v2 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- main latest build
- neurocondabuntu latest build
- ubuntu xenial-20210804 build
- coverage ==5.2.1
- datalad ==0.19.2
- datalad-container ==1.1.6
- datalad-neuroimaging ==0.3.1
- duecredit ==0.8.0
- mne ==0.24.1
- mne_connectivity ==0.3
- networkx ==2.6.3
- nibabel ==3.2.2
- numpy ==1.21.0
- pybids ==0.14.0
- pycartool ==0.1.1
- pydicom ==2.2.2
- scikit-image ==0.16.2
- statsmodels ==0.13.1
- dipy ==1.3.0
- grabbit *
- matplotlib *
- nbsphinx ==0.8.8
- nibabel ==3.2.2
- nipype ==1.7.0
- pybids ==0.14.0
- pycartool ==0.1.1
- pyface ==7.3.0
- readthedocs-sphinx-ext ==2.1.4
- recommonmark ==0.7.1
- sphinx ==4.2.0
- sphinx-argparse ==0.3.1
- sphinx-autodoc-typehints ==1.12.0
- sphinx-copybutton ==0.5.0
- sphinx-gallery ==0.10.1
- sphinx_rtd_theme ==1.0.0
- sphinxcontrib-apidoc ==0.3.0
- sphinxcontrib-napoleon ==0.7
- traits ==6.3.2
- traitsui ==7.2.0
- dipy 1.3.0.*
- fsleyes 1.3.3.*
- git-annex 10.20220724.*
- graphviz 2.50.0.*
- indexed_gzip
- mrtrix3 3.0.3.*
- pip 22.2.*
- pyqt 5.15.4.*
- pyqt5-sip 12.9.0.*
- python 3.9.*
- qt 5.15.4.*
- ants 2.2.0.*
- configparser 5.0.0.*
- cvxpy 1.3.1.*
- cvxpy-base 1.3.1.*
- dipy 1.3.0.*
- git-annex 8.20200617.*
- graphviz 2.40.1.*
- matplotlib 3.2.2.*
- mrtrix3 3.0.2.*
- nipype 1.8.0.*
- numpy 1.21.0.*
- obspy 1.2.2.*
- pip 20.1.1.*
- pydotplus 2.0.2.*
- python 3.8.*
- traits 6.2.0.*
- traitsui 7.0.0.*